Non-Coding RNA Search

Ss1.1-rese12c_n10.5

Sequence:


               
               GCCTGCCTCAGCCAACCTGGCTTTGAAACCTGCTTGCCCTTCATTTCAAAGAATCCCTGA
ACCAGAGAGAAAAGAGGAACACCTGGCAGGAAATGCAGCAAAGAAACTGTCCTGTCATCC
TCTGCTCTCATAGCCAGTCGAGGTGGTTTTAGTCCACAGACTGTGTGAGATTCCTGTTTC
TCCCACCTGGCCTCTGTGTTTGGATGCTTGTATTTGACTCGCATTTATCCAGCCCTTTTC
GATGCCTGGGGCGTGTCAGGCGCTTTACCCACAGTATCCCATGGGGCCCTCACCACACTC
CTAGGATGTGTGTGTTAGTCCCTCAGATCTGCAGAGAGGAGCCTGAGACTCAGAATCTAG
GCGACCCTCCCAGAGTCACAAGCTTGCATGTGACAGAACCAGGGCCATGGCCTCTTCCCC
CTGCCGTGATGACACGCAGGACCTCAGCATTGCTGGCCAATGACAAGCCTGGGAGAACAA
GCTGAGCATGCAGGCTCCCCATGGCTCCCCAGAGCAGGCGGCGAGGGAGGAGGGCCAGCC
AGCATGTGCTGGGCCATCAGTCTGGCCATCTGTCACATACAGAAGCAAACCGTGCCTTGT
GACAATACGTGCGCACCCCCCAACCCCCCCATGTCCCTCAACTCGCAGAAGTCCAACAGC
ACCAGCAGGCGAGTGGGCTGGCCTGCTGGGTGCTGTTGGCCTCTGTCTCTGCTCCACCTC
CCTCCCACCAGCCTGAATCATCCCACCTCACATGCCGCCACCAACTCTTACCAAGGGGGT
CCTCCTGTTGATTCTCAGCAGGCCGACTTGAGAGGTCTGAGGTTGTGTCCCCTACAGGAC
CCCCACAACTCTGCAGTGTCCTTGACAAGTCCCCACCATTCTCAGTGCCCCACAGCCTCC
CTCATGGTCTCTCCCTTGGCTTGCTTTGTGGCCAATGAACCAGTCACTTTGTATGCTCTG
CTCCTACTGTGATGGGAAACCAAAACAAGTATAACTTATTTTGTACCTATGTTCCGACTA
TATAGAGAATAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTGCCTCAGCCAACCTGGCTTTGAAACCTGCTTGCCCTTCATTTCAAAGAATCCCTGA
ACCAGAGAGAAAAGAGGAACACCTGGCAGGAAATGCAGCAAAGAAACTGTCCTGTCATCC
TCTGCTCTCATAGCCAGTCGAGGTGGTTTTAGTCCACAGACTGTGTGAGATTCCTGTTTC
TCCCACCTGGCCTCTGTGTTTGGATGCTTGTATTTGACTCGCATTTATCCAGCCCTTTTC
GATGCCTGGGGCGTGTCAGGCGCTTTACCCACAGTATCCCATGGGGCCCTCACCACACTC
CTAGGATGTGTGTGTTAGTCCCTCAGATCTGCAGAGAGGAGCCTGAGACTCAGAATCTAG
GCGACCCTCCCAGAGTCACAAGCTTGCATGTGACAGAACCAGGGCCATGGCCTCTTCCCC
CTGCCGTGATGACACGCAGGACCTCAGCATTGCTGGCCAATGACAAGCCTGGGAGAACAA
GCTGAGCATGCAGGCTCCCCATGGCTCCCCAGAGCAGGCGGCGAGGGAGGAGGGCCAGCC
AGCATGTGCTGGGCCATCAGTCTGGCCATCTGTCACATACAGAAGCAAACCGTGCCTTGT
GACAATACGTGCGCACCCCCCAACCCCCCCATGTCCCTCAACTCGCAGAAGTCCAACAGC
ACCAGCAGGCGAGTGGGCTGGCCTGCTGGGTGCTGTTGGCCTCTGTCTCTGCTCCACCTC
CCTCCCACCAGCCTGAATCATCCCACCTCACATGCCGCCACCAACTCTTACCAAGGGGGT
CCTCCTGTTGATTCTCAGCAGGCCGACTTGAGAGGTCTGAGGTTGTGTCCCCTACAGGAC
CCCCACAACTCTGCAGTGTCCTTGACAAGTCCCCACCATTCTCAGTGCCCCACAGCCTCC
CTCATGGTCTCTCCCTTGGCTTGCTTTGTGGCCAATGAACCAGTCACTTTGTATGCTCTG
CTCCTACTGTGATGGGAAACCAAAACAAGTATAACTTATTTTGTACCTATGTTCCGACTA
TATAGAGAATAT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               3-1032, gnl|bosTau2|chr11 (49635940-49634936)
               

               
               3-1032, gnl|Hg17|chr2 (31401800-31402829)
               

               
               3-1032, gnl|Mm7|chr17 (72119376-72120389)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1032, gnl|bosTau2|chr11 (49635940-49634936)
               

               
               3-1032, gnl|Hg17|chr2 (31401800-31402829)
               

               
               3-1032, gnl|Mm7|chr17 (72119376-72120389)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               nms (0.213858)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               ese (0.126502)
               

               
               nbm (0.0993246)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.213858)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               ese (0.126502)
               

               
               nbm (0.0993246)

	3-1032, gnl\|bosTau2\|chr11 (49635940-49634936)
	3-1032, gnl\|Hg17\|chr2 (31401800-31402829)
	3-1032, gnl\|Mm7\|chr17 (72119376-72120389)

	nms (0.213858)
	csp (0.161186)
	cag (0.151194)
	hyp (0.142837)
	ese (0.126502)
	nbm (0.0993246)