Non-Coding RNA Search

Ss1.1-rese14c_h12.5

Sequence:


               
               CGGGTGTCAGCCATCGCCTCCGAGGGGAAGGCTGAGGAGAGGTACAAGAAGCTGGAAGAG
CTTCTGGAGAAGAGCTTTTCTCTGGTGAAGATGCCGTCTCTGCAGCCGGTGGTGATGTGC
GTCATGAAACACTTGCCCAAGGTGCCTGAGAAGAAGCTGAAGCTGGTGATGGCTGACAAG
GAGTTGTACCGGGCCTGTGCCGTGGAGGTGAAGCGGCAGATCTGGCAGGACAACCAGGCG
CTCTTCGGCGACGAGGTCTCCCCGCTGCTGAAACAGTACATCGTGGAGAAGGAGAACGCG
CTCTTCAGCCCCGAGCTCTCCGTCCTGCACAACTTTTTCAGTCCTTCCCCCAAGACGAGG
CGCCAGGGTGAGGTGGTGCAGAAGCTGACCCGCATGGTGGGGCGCAACGTGAAGCTGTAC
GACATGGTGCTGCAGTTCCTGCGCACACTCTTCCTGCGCACCCGCAACGTGCACTACTGC
ACGCTGCGCGCCGAGCTGCTCATGTCCCTGCATGACCTCGACGTCGGCGACATCTGCTCC
GTGGACCCCTGCCACAAGTTCACCTGGTGCCTGGACGCTTGCATCCGAGAGCGGTTTGTG
GACGGCAAGAGGGCCCGGGAGCTGCAGGGGTTTCTTGACGGAGTAAAGAAAGGGCAGGAG
CAAGTCTTGGGGGACCTGTCCATGATCCTGTGCGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGGTGTCAGCCATCGCCTCCGAGGGGAAGGCTGAGGAGAGGTACAAGAAGCTGGAAGAG
CTTCTGGAGAAGAGCTTTTCTCTGGTGAAGATGCCGTCTCTGCAGCCGGTGGTGATGTGC
GTCATGAAACACTTGCCCAAGGTGCCTGAGAAGAAGCTGAAGCTGGTGATGGCTGACAAG
GAGTTGTACCGGGCCTGTGCCGTGGAGGTGAAGCGGCAGATCTGGCAGGACAACCAGGCG
CTCTTCGGCGACGAGGTCTCCCCGCTGCTGAAACAGTACATCGTGGAGAAGGAGAACGCG
CTCTTCAGCCCCGAGCTCTCCGTCCTGCACAACTTTTTCAGTCCTTCCCCCAAGACGAGG
CGCCAGGGTGAGGTGGTGCAGAAGCTGACCCGCATGGTGGGGCGCAACGTGAAGCTGTAC
GACATGGTGCTGCAGTTCCTGCGCACACTCTTCCTGCGCACCCGCAACGTGCACTACTGC
ACGCTGCGCGCCGAGCTGCTCATGTCCCTGCATGACCTCGACGTCGGCGACATCTGCTCC
GTGGACCCCTGCCACAAGTTCACCTGGTGCCTGGACGCTTGCATCCGAGAGCGGTTTGTG
GACGGCAAGAGGGCCCGGGAGCTGCAGGGGTTTCTTGACGGAGTAAAGAAAGGGCAGGAG
CAAGTCTTGGGGGACCTGTCCATGATCCTGTGCGAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55666747|ref|XP_528655.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55666747|ref|XP_528655.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               219-375, - strand, RNAz p=0.913655

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               219-375, - strand, RNAz p=0.913655

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               140-375, gnl|bosTau2|chr11 (85434857-85434622)
               

               
               140-375, gnl|Hg17|chr9 (137427111-137427346)
               

               
               140-375, gnl|Mm7|chr2 (25217397-25217162)
               


               
               552-672, gnl|bosTau2|chr11 (85433206-85433087)
               

               
               552-672, gnl|canFam2|chr9 (51743870-51743729)
               

               
               552-672, gnl|danRer3|chr5 (24029275-24029411)
               

               
               552-672, gnl|echTel1|scaffold_290975 (2141-2005)
               

               
               552-672, gnl|fr1|chrUn (242588126-242587981)
               

               
               552-672, gnl|galGal2|chr17 (8979660-8979530)
               

               
               552-672, gnl|hg17|chr9 (137434517-137434658)
               

               
               552-672, gnl|Hg17|chr9 (137434528-137434647)
               

               
               552-672, gnl|mm7|chr2 (25212571-25212432)
               

               
               552-672, gnl|Mm7|chr2 (25212556-25212437)
               

               
               552-672, gnl|monDom2|scaffold_1 (187194854-187194991)
               

               
               552-672, gnl|panTro1|chr11_random (47385489-47385348)
               

               
               552-672, gnl|rheMac2|chr15 (975431-975290)
               

               
               552-672, gnl|rn3|chr3 (3370766-3370627)
               

               
               552-672, gnl|tetNig1|chrUn_random (20246678-20246809)
               

               
               552-672, gnl|xenTro1|scaffold_346 (56058-55923)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               140-375, gnl|bosTau2|chr11 (85434857-85434622)
               

               
               140-375, gnl|Hg17|chr9 (137427111-137427346)
               

               
               140-375, gnl|Mm7|chr2 (25217397-25217162)
               


               
               552-672, gnl|bosTau2|chr11 (85433206-85433087)
               

               
               552-672, gnl|canFam2|chr9 (51743870-51743729)
               

               
               552-672, gnl|danRer3|chr5 (24029275-24029411)
               

               
               552-672, gnl|echTel1|scaffold_290975 (2141-2005)
               

               
               552-672, gnl|fr1|chrUn (242588126-242587981)
               

               
               552-672, gnl|galGal2|chr17 (8979660-8979530)
               

               
               552-672, gnl|hg17|chr9 (137434517-137434658)
               

               
               552-672, gnl|Hg17|chr9 (137434528-137434647)
               

               
               552-672, gnl|mm7|chr2 (25212571-25212432)
               

               
               552-672, gnl|Mm7|chr2 (25212556-25212437)
               

               
               552-672, gnl|monDom2|scaffold_1 (187194854-187194991)
               

               
               552-672, gnl|panTro1|chr11_random (47385489-47385348)
               

               
               552-672, gnl|rheMac2|chr15 (975431-975290)
               

               
               552-672, gnl|rn3|chr3 (3370766-3370627)
               

               
               552-672, gnl|tetNig1|chrUn_random (20246678-20246809)
               

               
               552-672, gnl|xenTro1|scaffold_346 (56058-55923)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ese (0.253004)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.253004)

	140-375, gnl\|bosTau2\|chr11 (85434857-85434622)
	140-375, gnl\|Hg17\|chr9 (137427111-137427346)
	140-375, gnl\|Mm7\|chr2 (25217397-25217162)

	552-672, gnl\|bosTau2\|chr11 (85433206-85433087)
	552-672, gnl\|canFam2\|chr9 (51743870-51743729)
	552-672, gnl\|danRer3\|chr5 (24029275-24029411)
	552-672, gnl\|echTel1\|scaffold_290975 (2141-2005)
	552-672, gnl\|fr1\|chrUn (242588126-242587981)
	552-672, gnl\|galGal2\|chr17 (8979660-8979530)
	552-672, gnl\|hg17\|chr9 (137434517-137434658)
	552-672, gnl\|Hg17\|chr9 (137434528-137434647)
	552-672, gnl\|mm7\|chr2 (25212571-25212432)
	552-672, gnl\|Mm7\|chr2 (25212556-25212437)
	552-672, gnl\|monDom2\|scaffold_1 (187194854-187194991)
	552-672, gnl\|panTro1\|chr11_random (47385489-47385348)
	552-672, gnl\|rheMac2\|chr15 (975431-975290)
	552-672, gnl\|rn3\|chr3 (3370766-3370627)
	552-672, gnl\|tetNig1\|chrUn_random (20246678-20246809)
	552-672, gnl\|xenTro1\|scaffold_346 (56058-55923)