Non-Coding RNA Search

Ss1.1-rese14c_n4.5

Sequence:


               
               CTCTGTGGGCTTTGTTTCGACATTCAGTGGGAAAGACACAGAGAAGTTATCACTGAGACT
TTGGGCAAAGACGTCACCACCGGATGGGCATCAAAGGGACTGGACTGGCCCCTGTTTGCA
CTGAGATGCTTGCTGCTCCTGACTCTTCTTTCCTAAGCTTGGCTGGCATATTCCTAGGGG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACAGATGTGCTCTTTTGTCTGAGGC
AAGAGTAAGGGGAGAGTTCTAGATAAAGACCCAGTCTGAGTCTTACCGTTGAACTGATGA
AAGAAGTGTCAGCCATCCCCACATGGATTGTCTGGCAGGAGAAACTCACTAAAGATCATC
ATCTGTAGCAGGTGTAGAGCATCTTGTGAAACTCACAGAGTATGAGGAGACTCAAAGGGC
CGGGGCAGTTTATATGGGTTGAGTTATACCAGCTGGACCAGGAATAGAACTAAGAACTCT
ATTTCTCAGGATTTCAGAAAGTTAGTAACTTGAGAGGCCCATGCTGAGCAACCAAACATC
CAGGAAATGAAAAGAAAAAGAAAATGTCCTTGGAGAATGACAAATTATTGGCTTTGTTGC
TTCATGAACCTAAGATAGAAAGGAAGGAGAAAAGAGCCATTATGTGGAAAGTGAGCTAGA
AACCAGGAGCAGAACAGATATGAATGAAACTGATTGAGCACGGAGAGGAGCGTGGTGAGG
GAGAGTGTAGTGTTGGCAGAGAGTAAAATTGGGTAATAAGAAACCAACCATCTACAGAAA
GGGGTATTGGGGAAAATTTGAGGGAAAAGAATGTTAGAGTGAAGGGGGATGATGGTGGCA
GGATGTGAGAGTGTGTGCTCTGTTGGAAAAACAGGTGGTATCTGTGCTGCTTCCTTTGAG
TCTGTCCCTCTGTCTTTTGCAGTTTGTCATAACTACCTGGGAAAGGGTAAGGAAACGCCC
AGAGCCAAGACCTCTTTTTTAGTTCCTCCCCATCCCTCAAATCCTAGCTCTTGTTCCTTT
TCAGCTTCAGGTCCTGATCTTTGATCCTAGAGGGAGATGGACTCCCCTCTCGGCATGACC
ACTGTCATCGCCCATCACATTTGCTGCTTGATCTGGACATTGTTCATTTCCTTTGCATAT
TGAGTGTGAGTCACATACCTTGGTTTGTGCACAAGAATAAACTTATACCCCATAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTGTGGGCTTTGTTTCGACATTCAGTGGGAAAGACACAGAGAAGTTATCACTGAGACT
TTGGGCAAAGACGTCACCACCGGATGGGCATCAAAGGGACTGGACTGGCCCCTGTTTGCA
CTGAGATGCTTGCTGCTCCTGACTCTTCTTTCCTAAGCTTGGCTGGCATATTCCTAGGGG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACAGATGTGCTCTTTTGTCTGAGGC
AAGAGTAAGGGGAGAGTTCTAGATAAAGACCCAGTCTGAGTCTTACCGTTGAACTGATGA
AAGAAGTGTCAGCCATCCCCACATGGATTGTCTGGCAGGAGAAACTCACTAAAGATCATC
ATCTGTAGCAGGTGTAGAGCATCTTGTGAAACTCACAGAGTATGAGGAGACTCAAAGGGC
CGGGGCAGTTTATATGGGTTGAGTTATACCAGCTGGACCAGGAATAGAACTAAGAACTCT
ATTTCTCAGGATTTCAGAAAGTTAGTAACTTGAGAGGCCCATGCTGAGCAACCAAACATC
CAGGAAATGAAAAGAAAAAGAAAATGTCCTTGGAGAATGACAAATTATTGGCTTTGTTGC
TTCATGAACCTAAGATAGAAAGGAAGGAGAAAAGAGCCATTATGTGGAAAGTGAGCTAGA
AACCAGGAGCAGAACAGATATGAATGAAACTGATTGAGCACGGAGAGGAGCGTGGTGAGG
GAGAGTGTAGTGTTGGCAGAGAGTAAAATTGGGTAATAAGAAACCAACCATCTACAGAAA
GGGGTATTGGGGAAAATTTGAGGGAAAAGAATGTTAGAGTGAAGGGGGATGATGGTGGCA
GGATGTGAGAGTGTGTGCTCTGTTGGAAAAACAGGTGGTATCTGTGCTGCTTCCTTTGAG
TCTGTCCCTCTGTCTTTTGCAGTTTGTCATAACTACCTGGGAAAGGGTAAGGAAACGCCC
AGAGCCAAGACCTCTTTTTTAGTTCCTCCCCATCCCTCAAATCCTAGCTCTTGTTCCTTT
TCAGCTTCAGGTCCTGATCTTTGATCCTAGAGGGAGATGGACTCCCCTCTCGGCATGACC
ACTGTCATCGCCCATCACATTTGCTGCTTGATCTGGACATTGTTCATTTCCTTTGCATAT
TGAGTGTGAGTCACATACCTTGGTTTGTGCACAAGAATAAACTTATACCCCATAAAAAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               2-301, gnl|bosTau2|chr20 (3760803-3760493)
               

               
               2-301, gnl|Hg17|chr10 (75076163-75075887)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-301, gnl|bosTau2|chr20 (3760803-3760493)
               

               
               2-301, gnl|Hg17|chr10 (75076163-75075887)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

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               ese (0.632511)
               

               
               eye (0.341006)
               

               
               ldo (0.291008)
               

               
               hlv (0.278513)
               

               
               ste (0.270416)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               pty (0.142714)
               

               
               che (0.136314)
               

               
               ssp (0.13552)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.632511)
               

               
               eye (0.341006)
               

               
               ldo (0.291008)
               

               
               hlv (0.278513)
               

               
               ste (0.270416)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               pty (0.142714)
               

               
               che (0.136314)
               

               
               ssp (0.13552)

	2-301, gnl\|bosTau2\|chr20 (3760803-3760493)
	2-301, gnl\|Hg17\|chr10 (75076163-75075887)

	ese (0.632511)
	eye (0.341006)
	ldo (0.291008)
	hlv (0.278513)
	ste (0.270416)
	mas (0.210305)
	hea (0.204499)
	pty (0.142714)
	che (0.136314)
	ssp (0.13552)