Ss1.1-rese15c_c18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGTGCACACTGTCCTGAACTGGTGACTTTGAACTTGCAAACTTGCTTACAAATCACAGA TGAAGGTCTCATTACTATATGCAGAGGGTGCCATAAGTTACAGTCCCTCTGTGCCTCTGG CTGCTCCAACATCACAGATGCCATCCTGAATGCCCTAGGTCAGAACTGTCCACGGCTTAG AATATTAGAAGTGGCAAGGTGTTCTCAATTAACAGATGTAGGCTTTACCACTCTGGCCAG GAATTGCCATGAGCTTGAAAAGATGGACCTGGAAGAGTGCGTTCAGATAACAGATAGCAC ACTAATCCAACTTTCTATACACTGTCCTCGACTTCAAGTATTGAGTCTGTCTCACTGTGA GCTGATCACAGACGATGGAATTCGTCACCTGGGGAATGGGGCCTGCGCCCATGACCAGCT GGAGGTTATTGAACTGGACAACTGCCCCCTAATCACAGATGCATCCCTGGAGCACTTGAA GAGCTGTCACAGCCTTGAGCGGATAGAACTCTATGACTGCCAGCAAATCACACGGGCTGG AATCAAGAGACTCAGGACCCATTTACCCAATATCAAAGTCCACGCCTACTTCGCACCTGT CACTCCACCCCCATCAGTAGGGGGCAGCAGACAGCGCTTCTGCAGATGCTGCATCATCCT ATGACAATGGAGGTGGTCAGCCTTGGTGAACTGAGTATTTAATGACACTTCTAGAGTTAC CGTGGATCTCCATTGGAAACGACCCCAGCGTTCCGGGCAAGGGTTTCAAAGTGAGGGCAG CGTCCAGATCTCCAGAGCCACACA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGTGCACACTGTCCTGAACTGGTGACTTTGAACTTGCAAACTTGCTTACAAATCACAGA TGAAGGTCTCATTACTATATGCAGAGGGTGCCATAAGTTACAGTCCCTCTGTGCCTCTGG CTGCTCCAACATCACAGATGCCATCCTGAATGCCCTAGGTCAGAACTGTCCACGGCTTAG AATATTAGAAGTGGCAAGGTGTTCTCAATTAACAGATGTAGGCTTTACCACTCTGGCCAG GAATTGCCATGAGCTTGAAAAGATGGACCTGGAAGAGTGCGTTCAGATAACAGATAGCAC ACTAATCCAACTTTCTATACACTGTCCTCGACTTCAAGTATTGAGTCTGTCTCACTGTGA GCTGATCACAGACGATGGAATTCGTCACCTGGGGAATGGGGCCTGCGCCCATGACCAGCT GGAGGTTATTGAACTGGACAACTGCCCCCTAATCACAGATGCATCCCTGGAGCACTTGAA GAGCTGTCACAGCCTTGAGCGGATAGAACTCTATGACTGCCAGCAAATCACACGGGCTGG AATCAAGAGACTCAGGACCCATTTACCCAATATCAAAGTCCACGCCTACTTCGCACCTGT CACTCCACCCCCATCAGTAGGGGGCAGCAGACAGCGCTTCTGCAGATGCTGCATCATCCT ATGACAATGGAGGTGGTCAGCCTTGGTGAACTGAGTATTTAATGACACTTCTAGAGTTAC CGTGGATCTCCATTGGAAACGACCCCAGCGTTCCGGGCAAGGGTTTCAAAGTGAGGGCAG CGTCCAGATCTCCAGAGCCACACA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 595-714, - strand, RNAz p=0.719898 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 595-714, - strand, RNAz p=0.719898 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 50-180, gnl|bosTau2|chr19 (34713942-34714072) | |
| 50-180, gnl|canFam2|chr9 (26440700-26440549) | |
| 50-180, gnl|danRer3|chr19 (68775799-68775932) | |
| 50-180, gnl|dasNov1|scaffold_13287 (43611-43460) | |
| 50-180, gnl|echTel1|scaffold_311375 (155068-154939) | |
| 50-180, gnl|fr1|chrUn (17902884-17902749) | |
| 50-180, gnl|galGal2|chr27 (2623350-2623501) | |
| 50-180, gnl|hg17|chr17 (34684729-34684880) | |
| 50-180, gnl|Hg17|chr17 (34684879-34684749) | |
| 50-180, gnl|loxAfr1|scaffold_6796 (46327-46176) | |
| 50-180, gnl|mm7|chr11 (98205948-98206099) | |
| 50-180, gnl|Mm7|chr11 (98206098-98205968) | |
| 50-180, gnl|monDom2|scaffold_18 (48296691-48296840) | |
| 50-180, gnl|oryCun1|scaffold_106674 (1855-1704) | |
| 50-180, gnl|panTro1|chr19 (37920020-37920171) | |
| 50-180, gnl|rheMac2|chr16 (49349381-49349532) | |
| 50-180, gnl|rn3|chr10 (86877899-86878050) | |
| 50-180, gnl|tetNig1|chr3 (12893719-12893851) | |
| 50-180, gnl|xenTro1|scaffold_334 (167322-167179) | |
| 556-804, gnl|bosTau2|chr19 (34721207-34721455) | |
| 556-804, gnl|Hg17|chr17 (34671347-34671092) | |
| 556-804, gnl|Mm7|chr11 (98198738-98198488) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 50-180, gnl|bosTau2|chr19 (34713942-34714072) | |
| 50-180, gnl|canFam2|chr9 (26440700-26440549) | |
| 50-180, gnl|danRer3|chr19 (68775799-68775932) | |
| 50-180, gnl|dasNov1|scaffold_13287 (43611-43460) | |
| 50-180, gnl|echTel1|scaffold_311375 (155068-154939) | |
| 50-180, gnl|fr1|chrUn (17902884-17902749) | |
| 50-180, gnl|galGal2|chr27 (2623350-2623501) | |
| 50-180, gnl|hg17|chr17 (34684729-34684880) | |
| 50-180, gnl|Hg17|chr17 (34684879-34684749) | |
| 50-180, gnl|loxAfr1|scaffold_6796 (46327-46176) | |
| 50-180, gnl|mm7|chr11 (98205948-98206099) | |
| 50-180, gnl|Mm7|chr11 (98206098-98205968) | |
| 50-180, gnl|monDom2|scaffold_18 (48296691-48296840) | |
| 50-180, gnl|oryCun1|scaffold_106674 (1855-1704) | |
| 50-180, gnl|panTro1|chr19 (37920020-37920171) | |
| 50-180, gnl|rheMac2|chr16 (49349381-49349532) | |
| 50-180, gnl|rn3|chr10 (86877899-86878050) | |
| 50-180, gnl|tetNig1|chr3 (12893719-12893851) | |
| 50-180, gnl|xenTro1|scaffold_334 (167322-167179) | |
| 556-804, gnl|bosTau2|chr19 (34721207-34721455) | |
| 556-804, gnl|Hg17|chr17 (34671347-34671092) | |
| 556-804, gnl|Mm7|chr11 (98198738-98198488) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| csp (0.161186) | |
| fat (0.147427) | |
| ese (0.126502) | |
| cty (0.10408) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| csp (0.161186) | |
| fat (0.147427) | |
| ese (0.126502) | |
| cty (0.10408) |