Non-Coding RNA Search

Ss1.1-rese15c_c22.5

Sequence:


               
               CGGGGTCATGGGGTGGGGGTGGGGTCTGTGCTGCCGCTGTCTGCAGGGAAGAGAGAGCCT
TCTTTCTGATGGAGAGGTTCTCCAGCTGTGGGCTGGCAAGCACGTGCCCCCACCCCGGCA
GTCTAGCTGTGACAAAATTTTGCAAAAGCAAATGAATGCAATGAACAAAACTTACAGGCG
ACCAGCTGAAACCGATTTAAAAGAACAAACTTTCCAAGCACTTTCAGCAGGCACCGGTTG
TTTGCAAACAATGTGCTAAGATGCAGGTGATCCGTTTATCAAAGGAGGCCCACAGCACCC
CTCATTAGCAATCCTTGGCTTTGGGTGGCATTGTATTCGTGAATGGTAGGAAGTGACATC
TTTCTAGGGTTATTCTAGTAGGGGTTTGGGGTTTGGTATTTCCTGTGCTAGTTCTCCTCT
TCTGCACCTACTCTCTCTACCCATCCTCCCCTCTAATCCCCACTCCCTCATCCAGGCAGG
AGAGATGGATCCTGGATTGGCATTTCCCAGAGGCCCTGCCCAGGCCATCTGAAAACCATC
CCCAGCCAGCCGGGTTCAGGCGGGGACTCCTTGGGTCCTGGCCTCGAAGGTGCCGGGAGG
GTGGGATGAGCTGTGTGCATCTGTGCACAGGTGAGCAGGCGCCCTTCCTGCCGTGTTCCT
GGGGGGAGGGCCCCCCCCCGGGGGGGGCTCTCAGTGTTCAGCACTGCTCAGCAGTAGAAG
GAGGTTTCTCACCTACTTGTCCCAGATGTGCCTTTAGTGTCATGTAAGAAGTTTTTAACT
TATATTTATTTTGTCGGGTTTTTTTAATTGCACAAAACACTAAGACTGAGAGGCTGGTTC
TGTTTCTCCTTTAAAGCTTTGCCTTCTTTCTGAACTTCCTTTCCCGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGGGTCATGGGGTGGGGGTGGGGTCTGTGCTGCCGCTGTCTGCAGGGAAGAGAGAGCCT
TCTTTCTGATGGAGAGGTTCTCCAGCTGTGGGCTGGCAAGCACGTGCCCCCACCCCGGCA
GTCTAGCTGTGACAAAATTTTGCAAAAGCAAATGAATGCAATGAACAAAACTTACAGGCG
ACCAGCTGAAACCGATTTAAAAGAACAAACTTTCCAAGCACTTTCAGCAGGCACCGGTTG
TTTGCAAACAATGTGCTAAGATGCAGGTGATCCGTTTATCAAAGGAGGCCCACAGCACCC
CTCATTAGCAATCCTTGGCTTTGGGTGGCATTGTATTCGTGAATGGTAGGAAGTGACATC
TTTCTAGGGTTATTCTAGTAGGGGTTTGGGGTTTGGTATTTCCTGTGCTAGTTCTCCTCT
TCTGCACCTACTCTCTCTACCCATCCTCCCCTCTAATCCCCACTCCCTCATCCAGGCAGG
AGAGATGGATCCTGGATTGGCATTTCCCAGAGGCCCTGCCCAGGCCATCTGAAAACCATC
CCCAGCCAGCCGGGTTCAGGCGGGGACTCCTTGGGTCCTGGCCTCGAAGGTGCCGGGAGG
GTGGGATGAGCTGTGTGCATCTGTGCACAGGTGAGCAGGCGCCCTTCCTGCCGTGTTCCT
GGGGGGAGGGCCCCCCCCCGGGGGGGGCTCTCAGTGTTCAGCACTGCTCAGCAGTAGAAG
GAGGTTTCTCACCTACTTGTCCCAGATGTGCCTTTAGTGTCATGTAAGAAGTTTTTAACT
TATATTTATTTTGTCGGGTTTTTTTAATTGCACAAAACACTAAGACTGAGAGGCTGGTTC
TGTTTCTCCTTTAAAGCTTTGCCTTCTTTCTGAACTTCCTTTCCCGCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               540-654, - strand, RNAz p=0.906423

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               540-654, - strand, RNAz p=0.906423

Aligned organism(s): 17 entry(ies)

More info

Aligned organism(s): 17 entry(ies)

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               119-664, gnl|bosTau2|chr12 (16941213-16941746)
               

               
               119-664, gnl|Hg17|chr1 (223127237-223126635)
               

               
               119-664, gnl|Mm7|chr1 (180403822-180404390)
               


               
               684-888, gnl|bosTau2|chr12 (16941734-16941936)
               

               
               684-888, gnl|canFam2|chr7 (41316938-41316720)
               

               
               684-888, gnl|echTel1|scaffold_311188 (942-1160)
               

               
               684-888, gnl|galGal2|chr14 (19651924-19652108)
               

               
               684-888, gnl|hg17|chr1 (223126356-223126574)
               

               
               684-888, gnl|Hg17|chr1 (223126658-223126437)
               

               
               684-888, gnl|loxAfr1|scaffold_14615 (60736-60526)
               

               
               684-888, gnl|mm7|chr1 (180404663-180404449)
               

               
               684-888, gnl|Mm7|chr1 (180404364-180404579)
               

               
               684-888, gnl|monDom2|scaffold_13 (34940829-34941068)
               

               
               684-888, gnl|oryCun1|scaffold_215433 (46554-46330)
               

               
               684-888, gnl|panTro1|chr1 (206946579-206946797)
               

               
               684-888, gnl|rheMac2|chr1 (143729165-143728949)
               

               
               684-888, gnl|rn3|chr13 (96329457-96329240)

Aligned organism(s): 17 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               119-664, gnl|bosTau2|chr12 (16941213-16941746)
               

               
               119-664, gnl|Hg17|chr1 (223127237-223126635)
               

               
               119-664, gnl|Mm7|chr1 (180403822-180404390)
               


               
               684-888, gnl|bosTau2|chr12 (16941734-16941936)
               

               
               684-888, gnl|canFam2|chr7 (41316938-41316720)
               

               
               684-888, gnl|echTel1|scaffold_311188 (942-1160)
               

               
               684-888, gnl|galGal2|chr14 (19651924-19652108)
               

               
               684-888, gnl|hg17|chr1 (223126356-223126574)
               

               
               684-888, gnl|Hg17|chr1 (223126658-223126437)
               

               
               684-888, gnl|loxAfr1|scaffold_14615 (60736-60526)
               

               
               684-888, gnl|mm7|chr1 (180404663-180404449)
               

               
               684-888, gnl|Mm7|chr1 (180404364-180404579)
               

               
               684-888, gnl|monDom2|scaffold_13 (34940829-34941068)
               

               
               684-888, gnl|oryCun1|scaffold_215433 (46554-46330)
               

               
               684-888, gnl|panTro1|chr1 (206946579-206946797)
               

               
               684-888, gnl|rheMac2|chr1 (143729165-143728949)
               

               
               684-888, gnl|rn3|chr13 (96329457-96329240)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               ese (0.253004)
               

               
               nep (0.183925)
               

               
               fhi (0.169578)
               

               
               eje (0.0988338)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.253004)
               

               
               nep (0.183925)
               

               
               fhi (0.169578)
               

               
               eje (0.0988338)

	119-664, gnl\|bosTau2\|chr12 (16941213-16941746)
	119-664, gnl\|Hg17\|chr1 (223127237-223126635)
	119-664, gnl\|Mm7\|chr1 (180403822-180404390)

	684-888, gnl\|bosTau2\|chr12 (16941734-16941936)
	684-888, gnl\|canFam2\|chr7 (41316938-41316720)
	684-888, gnl\|echTel1\|scaffold_311188 (942-1160)
	684-888, gnl\|galGal2\|chr14 (19651924-19652108)
	684-888, gnl\|hg17\|chr1 (223126356-223126574)
	684-888, gnl\|Hg17\|chr1 (223126658-223126437)
	684-888, gnl\|loxAfr1\|scaffold_14615 (60736-60526)
	684-888, gnl\|mm7\|chr1 (180404663-180404449)
	684-888, gnl\|Mm7\|chr1 (180404364-180404579)
	684-888, gnl\|monDom2\|scaffold_13 (34940829-34941068)
	684-888, gnl\|oryCun1\|scaffold_215433 (46554-46330)
	684-888, gnl\|panTro1\|chr1 (206946579-206946797)
	684-888, gnl\|rheMac2\|chr1 (143729165-143728949)
	684-888, gnl\|rn3\|chr13 (96329457-96329240)