Ss1.1-rese15c_o18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGGGATGTATGCTTCCGGCGGCTTGCAGGCTCCCTCCTCAGATTCCGGGACCACCCGGC TGAAGTAGTGGGCCCAGAACAGTGGACAGGCAGCCCATTGGTTGTTGGGCCCAGCCGTCT CTCACCATGGACCGGGACCTTCTGCGGCAGTCACTGAATTTCCACGGGCCTTCATTGCTC TCCCTGCTCCGGAGCGAACAGCAGGACAATCCGCACTTCCGGAGCCTCCTGGGCTCGGTG GCAGAGCCTCCGCGGGGCCCGCCACCCCAGCAGCAGTTACAGGGCAGAAAAGAGAAGAAA GTTGACAACATTGAAATACAAAAATTCATTTCCAAAAAAGCGGATCTGCTTTTTGCACTT TCCTGGAAATCAGGTACACCTACAACTTCTGAAATTAATGAAGATAATGAAGATCATTAT GCAGTCATGCCACCTTTAGAGCAGTTCATGGAGATACCTGGTATGGACCGAAGAGAGCTG TTTTTCCGAGATATTGAGCGTGGTGATATAGTGATTGGAAGAATTAGTTCCATTCGGGAA TTTGGGTTTTTCATGGTGTTGATTTGTTTAGGCAGTGGCATTATGAGAGATATATCCCAC TTAGAAATCACAGCTCTATGTCCATTAAGAGATGTGCCTTCTCTCAGTAACCATGGGGAT CCTTTATCATATTACCAGACTGGTGACATCATTCGAGCTGGAATCAAGGATATTGACAGA TATCATGAAAAGCTTGCAGTATCTCTATATAGCTCATCTCTTCCATCACACCTATCTGGT ATTAAATTAAGTGTAATTAGTTCCGAAGAACTTCCTTTGTACTACAGGAGAAATATTGAA CTAAATAGCAATTCTTTGGAATCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGGGATGTATGCTTCCGGCGGCTTGCAGGCTCCCTCCTCAGATTCCGGGACCACCCGGC TGAAGTAGTGGGCCCAGAACAGTGGACAGGCAGCCCATTGGTTGTTGGGCCCAGCCGTCT CTCACCATGGACCGGGACCTTCTGCGGCAGTCACTGAATTTCCACGGGCCTTCATTGCTC TCCCTGCTCCGGAGCGAACAGCAGGACAATCCGCACTTCCGGAGCCTCCTGGGCTCGGTG GCAGAGCCTCCGCGGGGCCCGCCACCCCAGCAGCAGTTACAGGGCAGAAAAGAGAAGAAA GTTGACAACATTGAAATACAAAAATTCATTTCCAAAAAAGCGGATCTGCTTTTTGCACTT TCCTGGAAATCAGGTACACCTACAACTTCTGAAATTAATGAAGATAATGAAGATCATTAT GCAGTCATGCCACCTTTAGAGCAGTTCATGGAGATACCTGGTATGGACCGAAGAGAGCTG TTTTTCCGAGATATTGAGCGTGGTGATATAGTGATTGGAAGAATTAGTTCCATTCGGGAA TTTGGGTTTTTCATGGTGTTGATTTGTTTAGGCAGTGGCATTATGAGAGATATATCCCAC TTAGAAATCACAGCTCTATGTCCATTAAGAGATGTGCCTTCTCTCAGTAACCATGGGGAT CCTTTATCATATTACCAGACTGGTGACATCATTCGAGCTGGAATCAAGGATATTGACAGA TATCATGAAAAGCTTGCAGTATCTCTATATAGCTCATCTCTTCCATCACACCTATCTGGT ATTAAATTAAGTGTAATTAGTTCCGAAGAACTTCCTTTGTACTACAGGAGAAATATTGAA CTAAATAGCAATTCTTTGGAATCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 490-613, + strand, RNAz p=0.973956 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 490-613, + strand, RNAz p=0.973956 |
| Aligned organism(s): 50 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
| 1-287, gnl|bosTau2|chr1 (52584638-52584360) | |
| 1-287, gnl|Hg17|chr3 (181802631-181802912) | |
| 1-287, gnl|Mm7|chr3 (33608976-33609202) | |
| 411-613, gnl|bosTau2|chr1 (52583677-52583475) | |
| 411-613, gnl|canFam2|chr34 (16913009-16913256) | |
| 411-613, gnl|danRer3|chrNA (229476880-229476665) | |
| 411-613, gnl|dasNov1|scaffold_1307 (4482-4735) | |
| 411-613, gnl|echTel1|scaffold_287227 (43677-43920) | |
| 411-613, gnl|fr1|chrUn (202502582-202502363) | |
| 411-613, gnl|galGal2|chr9 (16577991-16577749) | |
| 411-613, gnl|hg17|chr3 (181803585-181803834) | |
| 411-613, gnl|Hg17|chr3 (181803612-181803814) | |
| 411-613, gnl|loxAfr1|scaffold_7999 (46380-46630) | |
| 411-613, gnl|mm7|chr3 (33609931-33610168) | |
| 411-613, gnl|Mm7|chr3 (33609955-33610157) | |
| 411-613, gnl|monDom2|scaffold_28 (26816417-26816164) | |
| 411-613, gnl|oryCun1|scaffold_211089 (57905-58159) | |
| 411-613, gnl|panTro1|chr2 (185562911-185563159) | |
| 411-613, gnl|rheMac2|chr2 (106145341-106145091) | |
| 411-613, gnl|rn3|chr2 (120051319-120051558) | |
| 411-613, gnl|tetNig1|chrUn_random (82099523-82099303) | |
| 411-613, gnl|xenTro1|scaffold_213 (144905-145136) | |
| 696-828, gnl|bosTau2|chr1 (52582376-52582244) | |
| 696-828, gnl|canFam2|chr34 (16914139-16914299) | |
| 696-828, gnl|canFam2|chr34 (16914155-16914250) | |
| 696-828, gnl|danRer3|chrNA (229472059-229471901) | |
| 696-828, gnl|dasNov1|scaffold_1997 (63859-63986) | |
| 696-828, gnl|dasNov1|scaffold_1997 (63856-63951) | |
| 696-828, gnl|fr1|chrUn (202502096-202501938) | |
| 696-828, gnl|galGal2|chr9 (16577024-16576858) | |
| 696-828, gnl|galGal2|chr9 (16577072-16576913) | |
| 696-828, gnl|hg17|chr3 (181804946-181805110) | |
| 696-828, gnl|Hg17|chr3 (181804966-181805098) | |
| 696-828, gnl|hg17|chr7 (121393557-121393652) | |
| 696-828, gnl|mm7|chr3 (33611816-33611980) | |
| 696-828, gnl|mm7|chr3 (33611839-33611934) | |
| 696-828, gnl|Mm7|chr3 (33611839-33611971) | |
| 696-828, gnl|monDom2|scaffold_28 (26810270-26810110) | |
| 696-828, gnl|monDom2|scaffold_28 (26810252-26810158) | |
| 696-828, gnl|oryCun1|scaffold_211089 (59441-59603) | |
| 696-828, gnl|oryCun1|scaffold_211089 (59460-59554) | |
| 696-828, gnl|panTro1|chr2 (185564271-185564433) | |
| 696-828, gnl|panTro1|chr6 (123742164-123742258) | |
| 696-828, gnl|rheMac2|chr2 (106143705-106143547) | |
| 696-828, gnl|rheMac2|chr3 (159690522-159690617) | |
| 696-828, gnl|rn3|chr2 (120053066-120053230) | |
| 696-828, gnl|rn3|chr2 (120053089-120053184) | |
| 696-828, gnl|tetNig1|chrUn_random (82099014-82098859) | |
| 696-828, gnl|xenTro1|scaffold_213 (146322-146475) | |
| 696-828, gnl|xenTro1|scaffold_213 (146339-146432) |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-287, gnl|bosTau2|chr1 (52584638-52584360) | |
| 1-287, gnl|Hg17|chr3 (181802631-181802912) | |
| 1-287, gnl|Mm7|chr3 (33608976-33609202) | |
| 411-613, gnl|bosTau2|chr1 (52583677-52583475) | |
| 411-613, gnl|canFam2|chr34 (16913009-16913256) | |
| 411-613, gnl|danRer3|chrNA (229476880-229476665) | |
| 411-613, gnl|dasNov1|scaffold_1307 (4482-4735) | |
| 411-613, gnl|echTel1|scaffold_287227 (43677-43920) | |
| 411-613, gnl|fr1|chrUn (202502582-202502363) | |
| 411-613, gnl|galGal2|chr9 (16577991-16577749) | |
| 411-613, gnl|hg17|chr3 (181803585-181803834) | |
| 411-613, gnl|Hg17|chr3 (181803612-181803814) | |
| 411-613, gnl|loxAfr1|scaffold_7999 (46380-46630) | |
| 411-613, gnl|mm7|chr3 (33609931-33610168) | |
| 411-613, gnl|Mm7|chr3 (33609955-33610157) | |
| 411-613, gnl|monDom2|scaffold_28 (26816417-26816164) | |
| 411-613, gnl|oryCun1|scaffold_211089 (57905-58159) | |
| 411-613, gnl|panTro1|chr2 (185562911-185563159) | |
| 411-613, gnl|rheMac2|chr2 (106145341-106145091) | |
| 411-613, gnl|rn3|chr2 (120051319-120051558) | |
| 411-613, gnl|tetNig1|chrUn_random (82099523-82099303) | |
| 411-613, gnl|xenTro1|scaffold_213 (144905-145136) | |
| 696-828, gnl|bosTau2|chr1 (52582376-52582244) | |
| 696-828, gnl|canFam2|chr34 (16914139-16914299) | |
| 696-828, gnl|canFam2|chr34 (16914155-16914250) | |
| 696-828, gnl|danRer3|chrNA (229472059-229471901) | |
| 696-828, gnl|dasNov1|scaffold_1997 (63859-63986) | |
| 696-828, gnl|dasNov1|scaffold_1997 (63856-63951) | |
| 696-828, gnl|fr1|chrUn (202502096-202501938) | |
| 696-828, gnl|galGal2|chr9 (16577024-16576858) | |
| 696-828, gnl|galGal2|chr9 (16577072-16576913) | |
| 696-828, gnl|hg17|chr3 (181804946-181805110) | |
| 696-828, gnl|Hg17|chr3 (181804966-181805098) | |
| 696-828, gnl|hg17|chr7 (121393557-121393652) | |
| 696-828, gnl|mm7|chr3 (33611816-33611980) | |
| 696-828, gnl|mm7|chr3 (33611839-33611934) | |
| 696-828, gnl|Mm7|chr3 (33611839-33611971) | |
| 696-828, gnl|monDom2|scaffold_28 (26810270-26810110) | |
| 696-828, gnl|monDom2|scaffold_28 (26810252-26810158) | |
| 696-828, gnl|oryCun1|scaffold_211089 (59441-59603) | |
| 696-828, gnl|oryCun1|scaffold_211089 (59460-59554) | |
| 696-828, gnl|panTro1|chr2 (185564271-185564433) | |
| 696-828, gnl|panTro1|chr6 (123742164-123742258) | |
| 696-828, gnl|rheMac2|chr2 (106143705-106143547) | |
| 696-828, gnl|rheMac2|chr3 (159690522-159690617) | |
| 696-828, gnl|rn3|chr2 (120053066-120053230) | |
| 696-828, gnl|rn3|chr2 (120053089-120053184) | |
| 696-828, gnl|tetNig1|chrUn_random (82099014-82098859) | |
| 696-828, gnl|xenTro1|scaffold_213 (146322-146475) | |
| 696-828, gnl|xenTro1|scaffold_213 (146339-146432) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| ill (0.175593) | |
| nca (0.136874) | |
| sug (0.127291) | |
| ese (0.126502) | |
| ebs (0.118301) | |
| cbl (0.114797) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ill (0.175593) | |
| nca (0.136874) | |
| sug (0.127291) | |
| ese (0.126502) | |
| ebs (0.118301) | |
| cbl (0.114797) |