Ss1.1-rese16c_b5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGCAACATGGCCAACGCCCTGGCCAACGCCAGCTGCGAGCGCTGCCGGGGTGGCTTCGC GCCCGCGGAGAAGATCGTCAACAGCAATGGCGAGCTGTACCACGAGCAGTGCTTTGTGTG CGCCCAGTGCTTCCAGCAGTTCCCCGAGGGCCTCTTCTACGAGTTTGAAGGAAGGAAGTA CTGTGAACATGATTTTCAGATGCTCTTTGCTCCCTGCTGTCATCAGTGTGGTGAGTTCAT CATCGGCCGTGTCATCAAAGCCATGAACAACAGCTGGCATCCCGAGTGCTTCCGCTGCGA CCTCTGCCAGGAGGTCCTGGCCGACATCGGGTTTGTCAAGAACGCTGGCAGGCATCTGTG TCGCCCCTGTCACAACCGTGAGAAAGCCCGAGGCCTTGGAAAATACATCTGCCAGAAGTG TCATGCCATCATTGATGAGCAGCCTCTGATATTCAAGAACGACCCCTACCACCCGGACCA CTTCAACTGCGCCAACTGCGGGAAGGAACTGACGGCGGACGCCCGGGAGCTGAAGGGGGA GCTGTACTGCCTGCCGTGTCACGACAAAATGGGGGTGCCCATCTGTGGCGCCTGCCGCCG GCCCATTGAAGGGCGCGTGGTGAACGCCATGGGCAAGCAGTGGCACGTGGAGCATTTTGT GTGTGCCAAGTGTGAAAAGCCATTTCTCGGACATCGCCACTACGAGAGGAAGGGCCTGGC GTACTGTGAAACCCACTATAACCAGCTATTTGGTGATGTTTGTTTCCACTGCAACCGTGT TATAGAAGGTGATGTGGTCTCTGCCCTCAACAAGGCCTGGTGCGTGAGCTGCTTCGCCTG CTCCACCTGCAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGCAACATGGCCAACGCCCTGGCCAACGCCAGCTGCGAGCGCTGCCGGGGTGGCTTCGC GCCCGCGGAGAAGATCGTCAACAGCAATGGCGAGCTGTACCACGAGCAGTGCTTTGTGTG CGCCCAGTGCTTCCAGCAGTTCCCCGAGGGCCTCTTCTACGAGTTTGAAGGAAGGAAGTA CTGTGAACATGATTTTCAGATGCTCTTTGCTCCCTGCTGTCATCAGTGTGGTGAGTTCAT CATCGGCCGTGTCATCAAAGCCATGAACAACAGCTGGCATCCCGAGTGCTTCCGCTGCGA CCTCTGCCAGGAGGTCCTGGCCGACATCGGGTTTGTCAAGAACGCTGGCAGGCATCTGTG TCGCCCCTGTCACAACCGTGAGAAAGCCCGAGGCCTTGGAAAATACATCTGCCAGAAGTG TCATGCCATCATTGATGAGCAGCCTCTGATATTCAAGAACGACCCCTACCACCCGGACCA CTTCAACTGCGCCAACTGCGGGAAGGAACTGACGGCGGACGCCCGGGAGCTGAAGGGGGA GCTGTACTGCCTGCCGTGTCACGACAAAATGGGGGTGCCCATCTGTGGCGCCTGCCGCCG GCCCATTGAAGGGCGCGTGGTGAACGCCATGGGCAAGCAGTGGCACGTGGAGCATTTTGT GTGTGCCAAGTGTGAAAAGCCATTTCTCGGACATCGCCACTACGAGAGGAAGGGCCTGGC GTACTGTGAAACCCACTATAACCAGCTATTTGGTGATGTTTGTTTCCACTGCAACCGTGT TATAGAAGGTGATGTGGTCTCTGCCCTCAACAAGGCCTGGTGCGTGAGCTGCTTCGCCTG CTCCACCTGCAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 501-652, + strand, RNAz p=0.988929 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 501-652, + strand, RNAz p=0.988929 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BC065816, + |
| Aligned organism(s): 69 entry(ies) | More info |
| Aligned organism(s): 69 entry(ies) | Help | Less info |
| 1-163, gnl|bosTau2|chr2 (3637199-3637361) | |
| 1-163, gnl|canFam2|chr19 (25974667-25974482) | |
| 1-163, gnl|danRer3|chr14 (43004122-43004304) | |
| 1-163, gnl|dasNov1|scaffold_94952 (4714-4523) | |
| 1-163, gnl|echTel1|scaffold_182908 (2840-3030) | |
| 1-163, gnl|fr1|chrUn (97143100-97142918) | |
| 1-163, gnl|galGal2|chr9 (820994-821175) | |
| 1-163, gnl|hg17|chr2 (128131196-128131386) | |
| 1-163, gnl|Hg17|chr2 (128131371-128131207) | |
| 1-163, gnl|loxAfr1|scaffold_196339 (936-757) | |
| 1-163, gnl|mm7|chr18 (32333990-32333798) | |
| 1-163, gnl|Mm7|chr18 (32333812-32333977) | |
| 1-163, gnl|monDom2|scaffold_24 (43251962-43251768) | |
| 1-163, gnl|oryCun1|scaffold_209722 (58873-59059) | |
| 1-163, gnl|panTro1|chr13 (14253566-14253756) | |
| 1-163, gnl|rheMac2|chr13 (134117723-134117913) | |
| 1-163, gnl|rn3|chr18 (24395444-24395258) | |
| 1-163, gnl|tetNig1|chr2 (14264982-14264800) | |
| 1-163, gnl|xenTro1|scaffold_1258 (10129-9940) | |
| 230-352, gnl|bosTau2|chr2 (3639673-3639795) | |
| 230-352, gnl|canFam2|chr19 (25977276-25977131) | |
| 230-352, gnl|danRer3|chr14 (43002154-43002296) | |
| 230-352, gnl|echTel1|scaffold_283299 (7723-7587) | |
| 230-352, gnl|fr1|chrUn (97144197-97144068) | |
| 230-352, gnl|galGal2|chr9 (819550-819705) | |
| 230-352, gnl|hg17|chr2 (128128218-128128364) | |
| 230-352, gnl|Hg17|chr2 (128128349-128128227) | |
| 230-352, gnl|loxAfr1|scaffold_5938 (41583-41711) | |
| 230-352, gnl|mm7|chr18 (32336646-32336500) | |
| 230-352, gnl|Mm7|chr18 (32336513-32336635) | |
| 230-352, gnl|monDom2|scaffold_24 (43255068-43254931) | |
| 230-352, gnl|oryCun1|scaffold_209722 (56710-56855) | |
| 230-352, gnl|panTro1|chr13 (14250596-14250742) | |
| 230-352, gnl|rheMac2|chr13 (134114755-134114901) | |
| 230-352, gnl|rn3|chr18 (24398489-24398343) | |
| 230-352, gnl|tetNig1|chr2 (14265761-14265617) | |
| 230-352, gnl|xenTro1|scaffold_1258 (15400-15267) | |
| 501-652, gnl|bosTau2|chr2 (3651296-3651447) | |
| 501-652, gnl|canFam2|chr19 (25991406-25991241) | |
| 501-652, gnl|canFam2|chr19 (25991401-25991249) | |
| 501-652, gnl|danRer3|chr14 (42961519-42961681) | |
| 501-652, gnl|danRer3|chr14 (42961521-42961673) | |
| 501-652, gnl|dasNov1|scaffold_72041 (163-4) | |
| 501-652, gnl|dasNov1|scaffold_72041 (158-4) | |
| 501-652, gnl|echTel1|scaffold_311673 (2933-3098) | |
| 501-652, gnl|echTel1|scaffold_311673 (2938-3090) | |
| 501-652, gnl|fr1|chrUn (97144785-97144620) | |
| 501-652, gnl|fr1|chrUn (97144780-97144628) | |
| 501-652, gnl|galGal2|chr9 (808971-809132) | |
| 501-652, gnl|hg17|chr2 (128115850-128116015) | |
| 501-652, gnl|Hg17|chr2 (128116005-128115854) | |
| 501-652, gnl|hg17|chr4 (35889608-35889762) | |
| 501-652, gnl|loxAfr1|scaffold_5938 (38270-38428) | |
| 501-652, gnl|loxAfr1|scaffold_5938 (38275-38427) | |
| 501-652, gnl|mm7|chr18 (32347492-32347327) | |
| 501-652, gnl|mm7|chr18 (32347487-32347335) | |
| 501-652, gnl|Mm7|chr18 (32347335-32347486) | |
| 501-652, gnl|monDom2|scaffold_24 (43279756-43279591) | |
| 501-652, gnl|oryCun1|scaffold_143408 (313-158) | |
| 501-652, gnl|oryCun1|scaffold_143408 (308-159) | |
| 501-652, gnl|panTro1|chr13 (14238192-14238357) | |
| 501-652, gnl|panTro1|chr3 (38548167-38548321) | |
| 501-652, gnl|rheMac2|chr13 (134101889-134102054) | |
| 501-652, gnl|rheMac2|chr5 (31043803-31043957) | |
| 501-652, gnl|rn3|chr18 (24409267-24409102) | |
| 501-652, gnl|rn3|chr18 (24409253-24409110) | |
| 501-652, gnl|tetNig1|chr2 (14266363-14266202) | |
| 501-652, gnl|tetNig1|chr5 (8319592-8319440) | |
| 501-652, gnl|xenTro1|scaffold_1258 (18930-18765) |
| Aligned organism(s): 69 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-163, gnl|bosTau2|chr2 (3637199-3637361) | |
| 1-163, gnl|canFam2|chr19 (25974667-25974482) | |
| 1-163, gnl|danRer3|chr14 (43004122-43004304) | |
| 1-163, gnl|dasNov1|scaffold_94952 (4714-4523) | |
| 1-163, gnl|echTel1|scaffold_182908 (2840-3030) | |
| 1-163, gnl|fr1|chrUn (97143100-97142918) | |
| 1-163, gnl|galGal2|chr9 (820994-821175) | |
| 1-163, gnl|hg17|chr2 (128131196-128131386) | |
| 1-163, gnl|Hg17|chr2 (128131371-128131207) | |
| 1-163, gnl|loxAfr1|scaffold_196339 (936-757) | |
| 1-163, gnl|mm7|chr18 (32333990-32333798) | |
| 1-163, gnl|Mm7|chr18 (32333812-32333977) | |
| 1-163, gnl|monDom2|scaffold_24 (43251962-43251768) | |
| 1-163, gnl|oryCun1|scaffold_209722 (58873-59059) | |
| 1-163, gnl|panTro1|chr13 (14253566-14253756) | |
| 1-163, gnl|rheMac2|chr13 (134117723-134117913) | |
| 1-163, gnl|rn3|chr18 (24395444-24395258) | |
| 1-163, gnl|tetNig1|chr2 (14264982-14264800) | |
| 1-163, gnl|xenTro1|scaffold_1258 (10129-9940) | |
| 230-352, gnl|bosTau2|chr2 (3639673-3639795) | |
| 230-352, gnl|canFam2|chr19 (25977276-25977131) | |
| 230-352, gnl|danRer3|chr14 (43002154-43002296) | |
| 230-352, gnl|echTel1|scaffold_283299 (7723-7587) | |
| 230-352, gnl|fr1|chrUn (97144197-97144068) | |
| 230-352, gnl|galGal2|chr9 (819550-819705) | |
| 230-352, gnl|hg17|chr2 (128128218-128128364) | |
| 230-352, gnl|Hg17|chr2 (128128349-128128227) | |
| 230-352, gnl|loxAfr1|scaffold_5938 (41583-41711) | |
| 230-352, gnl|mm7|chr18 (32336646-32336500) | |
| 230-352, gnl|Mm7|chr18 (32336513-32336635) | |
| 230-352, gnl|monDom2|scaffold_24 (43255068-43254931) | |
| 230-352, gnl|oryCun1|scaffold_209722 (56710-56855) | |
| 230-352, gnl|panTro1|chr13 (14250596-14250742) | |
| 230-352, gnl|rheMac2|chr13 (134114755-134114901) | |
| 230-352, gnl|rn3|chr18 (24398489-24398343) | |
| 230-352, gnl|tetNig1|chr2 (14265761-14265617) | |
| 230-352, gnl|xenTro1|scaffold_1258 (15400-15267) | |
| 501-652, gnl|bosTau2|chr2 (3651296-3651447) | |
| 501-652, gnl|canFam2|chr19 (25991406-25991241) | |
| 501-652, gnl|canFam2|chr19 (25991401-25991249) | |
| 501-652, gnl|danRer3|chr14 (42961519-42961681) | |
| 501-652, gnl|danRer3|chr14 (42961521-42961673) | |
| 501-652, gnl|dasNov1|scaffold_72041 (163-4) | |
| 501-652, gnl|dasNov1|scaffold_72041 (158-4) | |
| 501-652, gnl|echTel1|scaffold_311673 (2933-3098) | |
| 501-652, gnl|echTel1|scaffold_311673 (2938-3090) | |
| 501-652, gnl|fr1|chrUn (97144785-97144620) | |
| 501-652, gnl|fr1|chrUn (97144780-97144628) | |
| 501-652, gnl|galGal2|chr9 (808971-809132) | |
| 501-652, gnl|hg17|chr2 (128115850-128116015) | |
| 501-652, gnl|Hg17|chr2 (128116005-128115854) | |
| 501-652, gnl|hg17|chr4 (35889608-35889762) | |
| 501-652, gnl|loxAfr1|scaffold_5938 (38270-38428) | |
| 501-652, gnl|loxAfr1|scaffold_5938 (38275-38427) | |
| 501-652, gnl|mm7|chr18 (32347492-32347327) | |
| 501-652, gnl|mm7|chr18 (32347487-32347335) | |
| 501-652, gnl|Mm7|chr18 (32347335-32347486) | |
| 501-652, gnl|monDom2|scaffold_24 (43279756-43279591) | |
| 501-652, gnl|oryCun1|scaffold_143408 (313-158) | |
| 501-652, gnl|oryCun1|scaffold_143408 (308-159) | |
| 501-652, gnl|panTro1|chr13 (14238192-14238357) | |
| 501-652, gnl|panTro1|chr3 (38548167-38548321) | |
| 501-652, gnl|rheMac2|chr13 (134101889-134102054) | |
| 501-652, gnl|rheMac2|chr5 (31043803-31043957) | |
| 501-652, gnl|rn3|chr18 (24409267-24409102) | |
| 501-652, gnl|rn3|chr18 (24409253-24409110) | |
| 501-652, gnl|tetNig1|chr2 (14266363-14266202) | |
| 501-652, gnl|tetNig1|chr5 (8319592-8319440) | |
| 501-652, gnl|xenTro1|scaffold_1258 (18930-18765) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| hea (0.204499) | |
| nep (0.183925) | |
| liv (0.146284) | |
| ese (0.126502) | |
| cbl (0.114797) | |
| cty (0.10408) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hea (0.204499) | |
| nep (0.183925) | |
| liv (0.146284) | |
| ese (0.126502) | |
| cbl (0.114797) | |
| cty (0.10408) |