Non-Coding RNA Search

Ss1.1-rese16c_e13.5

Sequence:


               
               GAAAAGTCAAAGGGAATTTAGCTTTATCTATGATGTTGACATTTTTTACAAGGTGAATGC
ATTTATATATTAGTTATATAATTA------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------CAACAACAACAACAAGACAAAAAA
AAAGTTAAGGGAAAACTTCTTAACCTTATTAGAAATCAGGGAAATGAACATTTCAATGAT
ACACATTTATACTAATCATCTAGAGATTGATGATGTCTGTGGTTGTCATTAATGGTAATG
TAATTTGGTTGACCTTTCAGGGTCTCCCGGTTTGAAATGTACATACCCTTTAACTGGTCA
CCTCACTTCCAGGAAACTGTCCCACAGAACTGTTTATACATGTGCATGAAGGTTCATGGG
AAGGAAGCTAAGGCTGCTTTGCTTAACAGTGAAAACCCGAGAGGAACCTAATTGTCCGTT
TCCTGTCCATATCTATTTCTTTTCCATTCATCTAGTTACTCAAGGCAAATACTGGGAGTT
ATCTTTAATTTTTCCTTTTTCTTTCTCCATACCCAGTCTATTAGCAAGCCTTGCCAATTC
CATCTCCAAAAACATGTCTCAAATCTAGCCATTCTCTCTGTCTCTACTGCCTTTGCCTCA
GTCCAAGGCATTATCAACTCTTGGCTTGTATTACATCTGGCCAGCTGGCTCCCAGATTCT
TCTACTACCCCCTTCTCCATCCTCCCATCCATTACCCACAATGCAGCCAAATTTAAAATA
TCAGTCAAATAGCATCATTTTCCTACCTAAAAATCTTTAATGATTTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAAGTCAAAGGGAATTTAGCTTTATCTATGATGTTGACATTTTTTACAAGGTGAATGC
ATTTATATATTAGTTATATAATTA------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------CAACAACAACAACAAGACAAAAAA
AAAGTTAAGGGAAAACTTCTTAACCTTATTAGAAATCAGGGAAATGAACATTTCAATGAT
ACACATTTATACTAATCATCTAGAGATTGATGATGTCTGTGGTTGTCATTAATGGTAATG
TAATTTGGTTGACCTTTCAGGGTCTCCCGGTTTGAAATGTACATACCCTTTAACTGGTCA
CCTCACTTCCAGGAAACTGTCCCACAGAACTGTTTATACATGTGCATGAAGGTTCATGGG
AAGGAAGCTAAGGCTGCTTTGCTTAACAGTGAAAACCCGAGAGGAACCTAATTGTCCGTT
TCCTGTCCATATCTATTTCTTTTCCATTCATCTAGTTACTCAAGGCAAATACTGGGAGTT
ATCTTTAATTTTTCCTTTTTCTTTCTCCATACCCAGTCTATTAGCAAGCCTTGCCAATTC
CATCTCCAAAAACATGTCTCAAATCTAGCCATTCTCTCTGTCTCTACTGCCTTTGCCTCA
GTCCAAGGCATTATCAACTCTTGGCTTGTATTACATCTGGCCAGCTGGCTCCCAGATTCT
TCTACTACCCCCTTCTCCATCCTCCCATCCATTACCCACAATGCAGCCAAATTTAAAATA
TCAGTCAAATAGCATCATTTTCCTACCTAAAAATCTTTAATGATTTCC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               247-756, gnl|bosTau2|chr5 (21679106-21679602)
               

               
               247-756, gnl|Hg17|chr12 (48374567-48373175)
               

               
               247-756, gnl|Mm7|chr15 (99346469-99346008)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               247-756, gnl|bosTau2|chr5 (21679106-21679602)
               

               
               247-756, gnl|Hg17|chr12 (48374567-48373175)
               

               
               247-756, gnl|Mm7|chr15 (99346469-99346008)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               ese (0.126502)
               

               
               bla (0.124347)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.126502)
               

               
               bla (0.124347)

	247-756, gnl\|bosTau2\|chr5 (21679106-21679602)
	247-756, gnl\|Hg17\|chr12 (48374567-48373175)
	247-756, gnl\|Mm7\|chr15 (99346469-99346008)