Non-Coding RNA Search

Ss1.1-rese16c_f5.5

Sequence:


               
               CAGGCGTCTGCCCCTGTTAATTAGCAGAGCAACCGAGCAGGGAGTTCCGCCCGCGACGTG
CCCGCCCGCGGAGGCGCCAGGCCCCGGGCTTCTCCCCGATCTGATCTATCTCGCAGCTGC
CCAGGTGCACCGCCCGCCTGTCCGCAGAAGATGGACCTGATGGACGGCTGCCAGTTCTCG
CCTTCTGAGTACTTCTACGATGGCTCCTGCATCCCATCCCCCGAGGGCGAGTTCGGGGAC
GAGTTTGAGCCACGAGTGGCTGCTTTCGGGGCGCACAAAGCAGACCTGCCCGGCTCAGAC
GAGGAAGAGCACGTGCGAGCACCTACGGGCCACCACCAGGCCGGCCACTGCCTCATGTGG
GCCTGCAAAGCGTGCAAGAGGAAATCCACCACCATGGATCGGCGGAAGGCGGCCACCATG
CGCGAGCGGAGACGCCTGAAGAAGGTCAACCAGGCGTTTGAGACGCTCAAGAGGTGCACC
ACGACTAACCCCAACCAGAGGCTGCCCAAGGTGGAGATCCTCAGGAATGCCATCCGCTAC
ATTGAGAGCCTGCAGGAGCTGCTGAGGGAGCAGGTGGAAAACTACTACAGCCTGCCCAGG
CAGAGCTGCTCTGAGCCCACCAGCCCCACCTCCAGCTGCTCCGACGGCATGCCTGAATGC
AACAGCCCTGTCTGGTCCAGAAAGAGCAGCAGTTTTGACAGTATCTACTGTCCGGATGTA
CCAAATGTATATGCCACGGATAAAAGCTCCTTATCCAGCCTGGATTGCTTATCCAGCATA
GTGGATCGGATCAGCAACTCCGAGCAACCTGAACTGCCTCTCCAGGACCCAGCCTCTCTC
TCTCCAGTTGCCAGCACCGATTCTCAGCCTGCAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGCGTCTGCCCCTGTTAATTAGCAGAGCAACCGAGCAGGGAGTTCCGCCCGCGACGTG
CCCGCCCGCGGAGGCGCCAGGCCCCGGGCTTCTCCCCGATCTGATCTATCTCGCAGCTGC
CCAGGTGCACCGCCCGCCTGTCCGCAGAAGATGGACCTGATGGACGGCTGCCAGTTCTCG
CCTTCTGAGTACTTCTACGATGGCTCCTGCATCCCATCCCCCGAGGGCGAGTTCGGGGAC
GAGTTTGAGCCACGAGTGGCTGCTTTCGGGGCGCACAAAGCAGACCTGCCCGGCTCAGAC
GAGGAAGAGCACGTGCGAGCACCTACGGGCCACCACCAGGCCGGCCACTGCCTCATGTGG
GCCTGCAAAGCGTGCAAGAGGAAATCCACCACCATGGATCGGCGGAAGGCGGCCACCATG
CGCGAGCGGAGACGCCTGAAGAAGGTCAACCAGGCGTTTGAGACGCTCAAGAGGTGCACC
ACGACTAACCCCAACCAGAGGCTGCCCAAGGTGGAGATCCTCAGGAATGCCATCCGCTAC
ATTGAGAGCCTGCAGGAGCTGCTGAGGGAGCAGGTGGAAAACTACTACAGCCTGCCCAGG
CAGAGCTGCTCTGAGCCCACCAGCCCCACCTCCAGCTGCTCCGACGGCATGCCTGAATGC
AACAGCCCTGTCTGGTCCAGAAAGAGCAGCAGTTTTGACAGTATCTACTGTCCGGATGTA
CCAAATGTATATGCCACGGATAAAAGCTCCTTATCCAGCCTGGATTGCTTATCCAGCATA
GTGGATCGGATCAGCAACTCCGAGCAACCTGAACTGCCTCTCCAGGACCCAGCCTCTCTC
TCTCCAGTTGCCAGCACCGATTCTCAGCCTGCAACT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q95L20_SHEEP

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q95L20_SHEEP

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               368-487, - strand, RNAz p=0.526608
               

               
               759-876, - strand, RNAz p=0.530618

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               368-487, - strand, RNAz p=0.526608
               

               
               759-876, - strand, RNAz p=0.530618

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-651, gnl|bosTau2|chr5 (7973254-7972610)
               

               
               1-651, gnl|Hg17|chr12 (79613170-79613811)
               

               
               1-651, gnl|Mm7|chr10 (106948555-106947914)
               


               
               289-574, gnl|bosTau2|chr15 (19663952-19663667)
               

               
               289-574, gnl|Hg17|chr11 (17698122-17698407)
               

               
               289-574, gnl|Mm7|chr7 (42553090-42553375)
               


               
               727-876, gnl|bosTau2|chr5 (7971278-7971129)
               

               
               727-876, gnl|Hg17|chr12 (79615107-79615256)
               

               
               727-876, gnl|Mm7|chr10 (106946694-106946545)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-651, gnl|bosTau2|chr5 (7973254-7972610)
               

               
               1-651, gnl|Hg17|chr12 (79613170-79613811)
               

               
               1-651, gnl|Mm7|chr10 (106948555-106947914)
               


               
               289-574, gnl|bosTau2|chr15 (19663952-19663667)
               

               
               289-574, gnl|Hg17|chr11 (17698122-17698407)
               

               
               289-574, gnl|Mm7|chr7 (42553090-42553375)
               


               
               727-876, gnl|bosTau2|chr5 (7971278-7971129)
               

               
               727-876, gnl|Hg17|chr12 (79615107-79615256)
               

               
               727-876, gnl|Mm7|chr10 (106946694-106946545)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ese (0.379507)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.379507)

	368-487, - strand, RNAz p=0.526608
	759-876, - strand, RNAz p=0.530618

	1-651, gnl\|bosTau2\|chr5 (7973254-7972610)
	1-651, gnl\|Hg17\|chr12 (79613170-79613811)
	1-651, gnl\|Mm7\|chr10 (106948555-106947914)

	289-574, gnl\|bosTau2\|chr15 (19663952-19663667)
	289-574, gnl\|Hg17\|chr11 (17698122-17698407)
	289-574, gnl\|Mm7\|chr7 (42553090-42553375)

	727-876, gnl\|bosTau2\|chr5 (7971278-7971129)
	727-876, gnl\|Hg17\|chr12 (79615107-79615256)
	727-876, gnl\|Mm7\|chr10 (106946694-106946545)