Non-Coding RNA Search

Ss1.1-rese16c_o8.5

Sequence:


               
               TTGGACCCCAGCCCACTGAGGGACACAGTGGCCGACGCCCTCATGTACCACCGGAACGAG
AGCCTGCAGCCCAGCCTGCAAGGCCCTCGGACCGAGCTGCGGTCGGACTTCCAGTGTGTT
GTGGGCTTCGGGGGCATCCACTCCACGCCATCCACTGTACTCAGCGACCAGGCCAAGTAC
CTGAACCCATTGCTGGGAGAGTGGAAGCACTTCACTGCCTCCCTGGCCCCCCGCATGTCC
AACCAGGGCATTGCTGTGCTCAACAACTTCGTGTACCTAATTGGAGGCGACAACAACGTA
CAGGGCTTCCGCGCCGAGTCCCGGTGCTGGAGGTATGACCCGAGGCACAACCGCTGGTTC
CAGATCCAGTCCCTGCAGCAGGAGCACGCTGACCTCTGCGTGTGTGTCGTGGGGAAGTAC
ATCTACGCAGTGGCTGGCCGCGACTACCATAATGACCTGAGTGCTGTGGAGCGCTACGAC
CCCGCCACCAACTCCTGGGCCTATGTGGCCCCACTCAAGAGGGAGGTGTATGCGCATGCA
GGCGCCACACTTCAGGGGAAGATGTATATCACCTGCGGCCGCCGCGGGGAGGACTACCTG
AAGGAGACCCACTGCTATGACCCAGGCAGCGACACCTGGCGCCCTCTGGCTGATGGGCCT
GTGCGGCGCGCCTGGCACGGCATGGCCACCCTCCTGGACAAGCTGTATGTGGTCGGGGGC
AGCAACAATGACGCTGGCTATAGGCGGGACGTGCACCAGGTGGCCTGCTACAGCTGCACG
ACCGGGCAGTGGTCGTCGGTCTGCCCACTCCCAGCGGGGCATGGGGAGCCTGGCATCGCT
GTGCTGGACAACAGGATCTACGTGCTGGGCGGCCGCTCGCACAACCGGGGCAGCCGCACG
GGCTATGTGCACATCTACGATGTGGAGAAGGACTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGGACCCCAGCCCACTGAGGGACACAGTGGCCGACGCCCTCATGTACCACCGGAACGAG
AGCCTGCAGCCCAGCCTGCAAGGCCCTCGGACCGAGCTGCGGTCGGACTTCCAGTGTGTT
GTGGGCTTCGGGGGCATCCACTCCACGCCATCCACTGTACTCAGCGACCAGGCCAAGTAC
CTGAACCCATTGCTGGGAGAGTGGAAGCACTTCACTGCCTCCCTGGCCCCCCGCATGTCC
AACCAGGGCATTGCTGTGCTCAACAACTTCGTGTACCTAATTGGAGGCGACAACAACGTA
CAGGGCTTCCGCGCCGAGTCCCGGTGCTGGAGGTATGACCCGAGGCACAACCGCTGGTTC
CAGATCCAGTCCCTGCAGCAGGAGCACGCTGACCTCTGCGTGTGTGTCGTGGGGAAGTAC
ATCTACGCAGTGGCTGGCCGCGACTACCATAATGACCTGAGTGCTGTGGAGCGCTACGAC
CCCGCCACCAACTCCTGGGCCTATGTGGCCCCACTCAAGAGGGAGGTGTATGCGCATGCA
GGCGCCACACTTCAGGGGAAGATGTATATCACCTGCGGCCGCCGCGGGGAGGACTACCTG
AAGGAGACCCACTGCTATGACCCAGGCAGCGACACCTGGCGCCCTCTGGCTGATGGGCCT
GTGCGGCGCGCCTGGCACGGCATGGCCACCCTCCTGGACAAGCTGTATGTGGTCGGGGGC
AGCAACAATGACGCTGGCTATAGGCGGGACGTGCACCAGGTGGCCTGCTACAGCTGCACG
ACCGGGCAGTGGTCGTCGGTCTGCCCACTCCCAGCGGGGCATGGGGAGCCTGGCATCGCT
GTGCTGGACAACAGGATCTACGTGCTGGGCGGCCGCTCGCACAACCGGGGCAGCCGCACG
GGCTATGTGCACATCTACGATGTGGAGAAGGACTGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57106230|ref|XP_543559.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57106230|ref|XP_543559.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               2-240, - strand, RNAz p=0.761974

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-240, - strand, RNAz p=0.761974

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               2-335, gnl|bosTau2|chr17 (44515861-44515528)
               

               
               2-335, gnl|canFam2|chr26 (33332628-33333052)
               

               
               2-335, gnl|danRer3|chrNA (97538240-97538667)
               

               
               2-335, gnl|dasNov1|scaffold_189440 (675-1099)
               

               
               2-335, gnl|fr1|chrUn (60515011-60515430)
               

               
               2-335, gnl|galGal2|chr15 (8223561-8223984)
               

               
               2-335, gnl|hg17|chr22 (19143688-19144112)
               

               
               2-335, gnl|Hg17|chr22 (19144029-19143696)
               

               
               2-335, gnl|loxAfr1|scaffold_14986 (56966-56544)
               

               
               2-335, gnl|mm7|chr16 (17326866-17326442)
               

               
               2-335, gnl|Mm7|chr16 (17326523-17326856)
               

               
               2-335, gnl|monDom2|scaffold_112 (3325850-3326267)
               

               
               2-335, gnl|oryCun1|scaffold_139890 (5285-4855)
               

               
               2-335, gnl|panTro1|chr23 (19117135-19117559)
               

               
               2-335, gnl|rheMac2|chr10 (64557183-64557607)
               

               
               2-335, gnl|rn3|chr11 (85239456-85239880)
               

               
               2-335, gnl|tetNig1|chr12 (11963304-11963729)
               

               
               2-335, gnl|xenTro1|scaffold_169 (885315-884897)
               


               
               524-762, gnl|bosTau2|chr17 (44510748-44510510)
               

               
               524-762, gnl|Hg17|chr22 (19125519-19125281)
               

               
               524-762, gnl|Mm7|chr16 (17338868-17339106)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-335, gnl|bosTau2|chr17 (44515861-44515528)
               

               
               2-335, gnl|canFam2|chr26 (33332628-33333052)
               

               
               2-335, gnl|danRer3|chrNA (97538240-97538667)
               

               
               2-335, gnl|dasNov1|scaffold_189440 (675-1099)
               

               
               2-335, gnl|fr1|chrUn (60515011-60515430)
               

               
               2-335, gnl|galGal2|chr15 (8223561-8223984)
               

               
               2-335, gnl|hg17|chr22 (19143688-19144112)
               

               
               2-335, gnl|Hg17|chr22 (19144029-19143696)
               

               
               2-335, gnl|loxAfr1|scaffold_14986 (56966-56544)
               

               
               2-335, gnl|mm7|chr16 (17326866-17326442)
               

               
               2-335, gnl|Mm7|chr16 (17326523-17326856)
               

               
               2-335, gnl|monDom2|scaffold_112 (3325850-3326267)
               

               
               2-335, gnl|oryCun1|scaffold_139890 (5285-4855)
               

               
               2-335, gnl|panTro1|chr23 (19117135-19117559)
               

               
               2-335, gnl|rheMac2|chr10 (64557183-64557607)
               

               
               2-335, gnl|rn3|chr11 (85239456-85239880)
               

               
               2-335, gnl|tetNig1|chr12 (11963304-11963729)
               

               
               2-335, gnl|xenTro1|scaffold_169 (885315-884897)
               


               
               524-762, gnl|bosTau2|chr17 (44510748-44510510)
               

               
               524-762, gnl|Hg17|chr22 (19125519-19125281)
               

               
               524-762, gnl|Mm7|chr16 (17338868-17339106)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               ese (0.379507)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.379507)

	2-335, gnl\|bosTau2\|chr17 (44515861-44515528)
	2-335, gnl\|canFam2\|chr26 (33332628-33333052)
	2-335, gnl\|danRer3\|chrNA (97538240-97538667)
	2-335, gnl\|dasNov1\|scaffold_189440 (675-1099)
	2-335, gnl\|fr1\|chrUn (60515011-60515430)
	2-335, gnl\|galGal2\|chr15 (8223561-8223984)
	2-335, gnl\|hg17\|chr22 (19143688-19144112)
	2-335, gnl\|Hg17\|chr22 (19144029-19143696)
	2-335, gnl\|loxAfr1\|scaffold_14986 (56966-56544)
	2-335, gnl\|mm7\|chr16 (17326866-17326442)
	2-335, gnl\|Mm7\|chr16 (17326523-17326856)
	2-335, gnl\|monDom2\|scaffold_112 (3325850-3326267)
	2-335, gnl\|oryCun1\|scaffold_139890 (5285-4855)
	2-335, gnl\|panTro1\|chr23 (19117135-19117559)
	2-335, gnl\|rheMac2\|chr10 (64557183-64557607)
	2-335, gnl\|rn3\|chr11 (85239456-85239880)
	2-335, gnl\|tetNig1\|chr12 (11963304-11963729)
	2-335, gnl\|xenTro1\|scaffold_169 (885315-884897)

	524-762, gnl\|bosTau2\|chr17 (44510748-44510510)
	524-762, gnl\|Hg17\|chr22 (19125519-19125281)
	524-762, gnl\|Mm7\|chr16 (17338868-17339106)