Non-Coding RNA Search

Ss1.1-rese17c_a7.5.5

Sequence:


               
               CCTGGGCGCGCTTGGCCCCGAGAACGCAAGTACCTGAGTCTTCTCGTCGGTGCGTCCCGC
CCTTGCCCACGCAGCTTTCAGTCATGGCCTCTGGCAACGCGCACATCGGAAAGCCCGCCC
CGGAATTCCAGGCCACTGCCGTGGTGAATGGCGCCTTCAAGGAGGTGAAGCTTTCTGACT
ACAAAGGGAAGTACTTGGTCCTCTTTTTCTACCCGCTGGATTTCACCTTTGTGTGCCCCA
CGGAGATCATCGCTTTCAGCGATCGAGCTGAGGAGTTCCACCAGCTGGGCTGCGAGGTGC
TGGGCGTCTCCGTTGACTCTCAGTTCACCCACCTGGCTTGGATCAACACCCCACGGAAGG
AGGGAGGCTTGGGCCCCCTGAAAATCCCCCTGCTGGCTGATGTAACCAGAAACTTGTCCC
TTGATTATGGTGTGCTGAAGGAAGATGAAGGCATCGCCTACAGGGGCCTTTTTATCATCG
ATGGCAAGGGTGTCCTTCGCCAGATCACTGTCAATGATTTGCCTGTGGGACGCTCTGTGG
ATGAGGCTCTGAGGCTGGTCCAGGCCTTCCAGTACACAGACGAGCATGGGGAAGTCTGTC
CTGCTGGCTGGAAGCCAGGCAGCGACACAATCAAGCCCAACGTGGATGACAGCAAGGAAT
ATTTCTCCAAACACAACTAGGCTGGCAGATATATGGCAAGCTTGGGCTCTGGCCTCCATC
TGTGCCCCTCCCTCGGTGCCCTGTACTGACCCAGGAAAAGCCAGACCTGCCCCTTGAGAC
TCCACAGTCCATAATCCTAGAGGACTAGGCCAGGGCCTTCTCAAGCTCCTCTCTGGGAGC
TGGTGAATGGTGACCCCCTTTCCTGGAGCGACATAGCTGGGTACAGGCCTTTTGGTGACC
AATAAAGTATTAGGGACAAATGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGGGCGCGCTTGGCCCCGAGAACGCAAGTACCTGAGTCTTCTCGTCGGTGCGTCCCGC
CCTTGCCCACGCAGCTTTCAGTCATGGCCTCTGGCAACGCGCACATCGGAAAGCCCGCCC
CGGAATTCCAGGCCACTGCCGTGGTGAATGGCGCCTTCAAGGAGGTGAAGCTTTCTGACT
ACAAAGGGAAGTACTTGGTCCTCTTTTTCTACCCGCTGGATTTCACCTTTGTGTGCCCCA
CGGAGATCATCGCTTTCAGCGATCGAGCTGAGGAGTTCCACCAGCTGGGCTGCGAGGTGC
TGGGCGTCTCCGTTGACTCTCAGTTCACCCACCTGGCTTGGATCAACACCCCACGGAAGG
AGGGAGGCTTGGGCCCCCTGAAAATCCCCCTGCTGGCTGATGTAACCAGAAACTTGTCCC
TTGATTATGGTGTGCTGAAGGAAGATGAAGGCATCGCCTACAGGGGCCTTTTTATCATCG
ATGGCAAGGGTGTCCTTCGCCAGATCACTGTCAATGATTTGCCTGTGGGACGCTCTGTGG
ATGAGGCTCTGAGGCTGGTCCAGGCCTTCCAGTACACAGACGAGCATGGGGAAGTCTGTC
CTGCTGGCTGGAAGCCAGGCAGCGACACAATCAAGCCCAACGTGGATGACAGCAAGGAAT
ATTTCTCCAAACACAACTAGGCTGGCAGATATATGGCAAGCTTGGGCTCTGGCCTCCATC
TGTGCCCCTCCCTCGGTGCCCTGTACTGACCCAGGAAAAGCCAGACCTGCCCCTTGAGAC
TCCACAGTCCATAATCCTAGAGGACTAGGCCAGGGCCTTCTCAAGCTCCTCTCTGGGAGC
TGGTGAATGGTGACCCCCTTTCCTGGAGCGACATAGCTGGGTACAGGCCTTTTGGTGACC
AATAAAGTATTAGGGACAAATGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|47496659|emb|CAG29352.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47496659|emb|CAG29352.1|

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               158-612, gnl|bosTau2|chr11 (35830520-35830970)
               

               
               158-612, gnl|Hg17|chr22 (37443743-37443317)
               

               
               158-612, gnl|Mm7|chr4 (26663791-26663356)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               158-612, gnl|bosTau2|chr11 (35830520-35830970)
               

               
               158-612, gnl|Hg17|chr22 (37443743-37443317)
               

               
               158-612, gnl|Mm7|chr4 (26663791-26663356)

Expressed library(ies): 49 entry(ies)

More info

Expressed library(ies): 49 entry(ies)

Help | Less info


               
               cov (2.77521)
               

               
               eli (2.27721)
               

               
               nbm (2.08582)
               

               
               ebs (1.30131)
               

               
               cag (1.05836)
               

               
               eye (1.02302)
               

               
               eep (0.980512)
               

               
               nep (0.919625)
               

               
               cli (0.91687)
               

               
               hlv (0.835538)
               

               
               nlu (0.766724)
               

               
               ecc (0.690211)
               

               
               ece (0.687916)
               

               
               ese (0.632511)
               

               
               cly (0.603209)
               

               
               eje (0.593003)
               

               
               nca (0.547495)
               

               
               fce (0.543183)
               

               
               fty (0.527519)
               

               
               cbr (0.511902)
               

               
               fhi (0.508733)
               

               
               jej (0.494609)
               

               
               mas (0.42061)
               

               
               amn (0.417711)
               

               
               fcc (0.39557)
               

               
               ill (0.351185)
               

               
               fbs (0.350693)
               

               
               cki (0.330469)
               

               
               hyp (0.285673)
               

               
               lnt (0.284616)
               

               
               cga (0.279096)
               

               
               che (0.272628)
               

               
               eru (0.240096)
               

               
               med (0.232504)
               

               
               jca (0.22792)
               

               
               nms (0.213858)
               

               
               fli (0.202881)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)

Expressed library(ies): 49 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (2.77521)
               

               
               eli (2.27721)
               

               
               nbm (2.08582)
               

               
               ebs (1.30131)
               

               
               cag (1.05836)
               

               
               eye (1.02302)
               

               
               eep (0.980512)
               

               
               nep (0.919625)
               

               
               cli (0.91687)
               

               
               hlv (0.835538)
               

               
               nlu (0.766724)
               

               
               ecc (0.690211)
               

               
               ece (0.687916)
               

               
               ese (0.632511)
               

               
               cly (0.603209)
               

               
               eje (0.593003)
               

               
               nca (0.547495)
               

               
               fce (0.543183)
               

               
               fty (0.527519)
               

               
               cbr (0.511902)
               

               
               fhi (0.508733)
               

               
               jej (0.494609)
               

               
               mas (0.42061)
               

               
               amn (0.417711)
               

               
               fcc (0.39557)
               

               
               ill (0.351185)
               

               
               fbs (0.350693)
               

               
               cki (0.330469)
               

               
               hyp (0.285673)
               

               
               lnt (0.284616)
               

               
               cga (0.279096)
               

               
               che (0.272628)
               

               
               eru (0.240096)
               

               
               med (0.232504)
               

               
               jca (0.22792)
               

               
               nms (0.213858)
               

               
               fli (0.202881)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)

	158-612, gnl\|bosTau2\|chr11 (35830520-35830970)
	158-612, gnl\|Hg17\|chr22 (37443743-37443317)
	158-612, gnl\|Mm7\|chr4 (26663791-26663356)

	cov (2.77521)
	eli (2.27721)
	nbm (2.08582)
	ebs (1.30131)
	cag (1.05836)
	eye (1.02302)
	eep (0.980512)
	nep (0.919625)
	cli (0.91687)
	hlv (0.835538)
	nlu (0.766724)
	ecc (0.690211)
	ece (0.687916)
	ese (0.632511)
	cly (0.603209)
	eje (0.593003)
	nca (0.547495)
	fce (0.543183)
	fty (0.527519)
	cbr (0.511902)
	fhi (0.508733)
	jej (0.494609)
	mas (0.42061)
	amn (0.417711)
	fcc (0.39557)
	ill (0.351185)
	fbs (0.350693)
	cki (0.330469)
	hyp (0.285673)
	lnt (0.284616)
	cga (0.279096)
	che (0.272628)
	eru (0.240096)
	med (0.232504)
	jca (0.22792)
	nms (0.213858)
	fli (0.202881)
	aor (0.195274)
	col (0.195008)
	mcp (0.170648)
	cut (0.169924)
	nje (0.16592)
	nco (0.161734)
	pty (0.142714)
	cst (0.140036)
	nmm (0.132802)
	ute (0.132784)
	sug (0.127291)
	pgl (0.118483)