Non-Coding RNA Search

Ss1.1-rese17c_g8.5

Sequence:


               
               AGCGCTGCGAGTCTGGATAACGCCTTCCTCCTGTCTGCCTCCCAAGCACTTAGTAGGTGC
GCCATAATCGTGTACCTGATGAATGTTGTGTTAAGGAGCTGCAGGAGTTCTGGGAAGCAG
GGACCTGTGGCTGAGAGGGATGCCCACCGGAATCTGGCTCAGGAGATACCTGCTTTGGAT
GGATAGAAGTCCTTGAAGTCCACCTGCTCGTGGGCCCCCTCGCAGCCAGCCAGACACCGG
GCAAAGACGGCCAGGTACTCGGCCAGGGCCCGCTCCATGTCCTCCGTGCTGCCGCGGAAA
TCGCCGCTGTTGTAGAGCTTCACAGCCCGGAGGAACACGGCCTCGTAGGGCTGGGCCTCC
AAGTCCGTGAGGGGCTCCTCGGCGGCGTCCAGCAGCCCCCGATAGTAGTTGAGGTACTTG
GCGGTGAGCTCGTGCTTCGGGTTCCTCTGGAGGAAGGTGTAGGCCGCGGCCACCGCCTTC
TCCAGCCGGTTAGCCTTGAACTGCGCGTAGTGCAAGTACTGGTAGGGCAGGCGGCTCTGG
AAGTCGCGCAGCAGCTGGCGCGGCGGGTAGGGCACCTGGAAGGCGGGCAGCGAACGCTTG
CAGCGCCGCAGGCAGGCGGCGCGCTCCAGGACGTGGCCGAAGAGCTGCAGCTCGCGGGCC
CACTCGTCTTCGTGACCGCCGTCGGGGTCGGGCGGCGCCGGCCCGGGGGTCGCGGCGGAG
GGCGGCGCGGGGCCGCTGCAGTTGGCGTGGCAGAAGGCCTCGCTGTCCCGCAGCAGCCGG
TGCAGCCGCAGCGCCGCCTCGAGGTAGCGCGCGCTCTCGCGCCAGCTCTCGCCCTCGTAC
TGCTCCAGCGCGTGCCCGTAGGCCGCGGCCAGGGGCATCAGGTCCTCGGGCGGGAAGCCC
CGGAAGCTGTACTTCTCGTACTGCGCCCCTGCGCTGCCCAGCAGCAGCCACAGCAGCCCC
CACGCCGTCCGAGCCATGCCCCCTCCGCGCCGGCCGGCTCTCCCCGGCCAAGCAGGCGTC
CCGGCCCAGCGGGCGGGCAGGCGGGCGGGCTCAGGGGCCGGGGCCTGCCAGGCGTGCCCG
CTGGGTCTTAGCGCCGGGACTGGGGGCGGCGAGGCGGGGTGATGCCTTGAGTCAGATCCC
CCGAAGGGCCGAGGCCTTCGTCTCCACTCTTTTCAGAAAGCCCAGCGCTGTCCTTAGTCG
TTGATCTCCTGCCCTTGCCTCGGCAGATGGTGAGTGGGTGGGGGAACGCTTCCCACAGGG
GTGGGAGAGCCCAGAAAGCCCTTCCTATACAAAGACAGTCCCCCCCACCTTAAAATAGAG
AAATCGAGGGGCGTGCCACCTCCCTCTCCTTTGCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCGCTGCGAGTCTGGATAACGCCTTCCTCCTGTCTGCCTCCCAAGCACTTAGTAGGTGC
GCCATAATCGTGTACCTGATGAATGTTGTGTTAAGGAGCTGCAGGAGTTCTGGGAAGCAG
GGACCTGTGGCTGAGAGGGATGCCCACCGGAATCTGGCTCAGGAGATACCTGCTTTGGAT
GGATAGAAGTCCTTGAAGTCCACCTGCTCGTGGGCCCCCTCGCAGCCAGCCAGACACCGG
GCAAAGACGGCCAGGTACTCGGCCAGGGCCCGCTCCATGTCCTCCGTGCTGCCGCGGAAA
TCGCCGCTGTTGTAGAGCTTCACAGCCCGGAGGAACACGGCCTCGTAGGGCTGGGCCTCC
AAGTCCGTGAGGGGCTCCTCGGCGGCGTCCAGCAGCCCCCGATAGTAGTTGAGGTACTTG
GCGGTGAGCTCGTGCTTCGGGTTCCTCTGGAGGAAGGTGTAGGCCGCGGCCACCGCCTTC
TCCAGCCGGTTAGCCTTGAACTGCGCGTAGTGCAAGTACTGGTAGGGCAGGCGGCTCTGG
AAGTCGCGCAGCAGCTGGCGCGGCGGGTAGGGCACCTGGAAGGCGGGCAGCGAACGCTTG
CAGCGCCGCAGGCAGGCGGCGCGCTCCAGGACGTGGCCGAAGAGCTGCAGCTCGCGGGCC
CACTCGTCTTCGTGACCGCCGTCGGGGTCGGGCGGCGCCGGCCCGGGGGTCGCGGCGGAG
GGCGGCGCGGGGCCGCTGCAGTTGGCGTGGCAGAAGGCCTCGCTGTCCCGCAGCAGCCGG
TGCAGCCGCAGCGCCGCCTCGAGGTAGCGCGCGCTCTCGCGCCAGCTCTCGCCCTCGTAC
TGCTCCAGCGCGTGCCCGTAGGCCGCGGCCAGGGGCATCAGGTCCTCGGGCGGGAAGCCC
CGGAAGCTGTACTTCTCGTACTGCGCCCCTGCGCTGCCCAGCAGCAGCCACAGCAGCCCC
CACGCCGTCCGAGCCATGCCCCCTCCGCGCCGGCCGGCTCTCCCCGGCCAAGCAGGCGTC
CCGGCCCAGCGGGCGGGCAGGCGGGCGGGCTCAGGGGCCGGGGCCTGCCAGGCGTGCCCG
CTGGGTCTTAGCGCCGGGACTGGGGGCGGCGAGGCGGGGTGATGCCTTGAGTCAGATCCC
CCGAAGGGCCGAGGCCTTCGTCTCCACTCTTTTCAGAAAGCCCAGCGCTGTCCTTAGTCG
TTGATCTCCTGCCCTTGCCTCGGCAGATGGTGAGTGGGTGGGGGAACGCTTCCCACAGGG
GTGGGAGAGCCCAGAAAGCCCTTCCTATACAAAGACAGTCCCCCCCACCTTAAAATAGAG
AAATCGAGGGGCGTGCCACCTCCCTCTCCTTTGCCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|31543672|ref|NP_789800.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|31543672|ref|NP_789800.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               220-339, - strand, RNAz p=0.568051

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               220-339, - strand, RNAz p=0.568051

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               41-355, gnl|bosTau2|chr23 (152914-152610)
               

               
               41-355, gnl|Hg17|chr17 (37220564-37220825)
               

               
               41-355, gnl|Mm7|chr11 (100522501-100522832)
               


               
               695-997, gnl|bosTau2|chr19 (1179483-1179176)
               

               
               695-997, gnl|Hg17|chr3 (33130877-33130562)
               

               
               695-997, gnl|Mm7|chr9 (114041395-114041705)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               41-355, gnl|bosTau2|chr23 (152914-152610)
               

               
               41-355, gnl|Hg17|chr17 (37220564-37220825)
               

               
               41-355, gnl|Mm7|chr11 (100522501-100522832)
               


               
               695-997, gnl|bosTau2|chr19 (1179483-1179176)
               

               
               695-997, gnl|Hg17|chr3 (33130877-33130562)
               

               
               695-997, gnl|Mm7|chr9 (114041395-114041705)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               eep (0.490256)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.490256)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)

	41-355, gnl\|bosTau2\|chr23 (152914-152610)
	41-355, gnl\|Hg17\|chr17 (37220564-37220825)
	41-355, gnl\|Mm7\|chr11 (100522501-100522832)

	695-997, gnl\|bosTau2\|chr19 (1179483-1179176)
	695-997, gnl\|Hg17\|chr3 (33130877-33130562)
	695-997, gnl\|Mm7\|chr9 (114041395-114041705)