Non-Coding RNA Search

Ss1.1-rese17c_m9.5

Sequence:


               
               GGACAATGTGATGAAGATCGCTGACTTTGGGCTGGCCCGAGGCATCCACCATATTGACTA
CTACAAGAAAACAAGCAACGGCCGCCTGCCTGTCAAGTGGATGGCACCTGAGGCCTTGTT
TGACAGAGTCTACACACACCAGAGTGACGTGTGGTCATTTGGGATCCTGCTGTGGGAGAT
CTTTACCCTCGGGGGCTCCCCGTACCCTGGCATCCCCGTGGAGGAGCTGTTCTCGCTGCT
ACGGGAGGGCCATCGGATGGACCGGCCCCCACACTGCCCTCCAGAGTTGTATGGGCTGAT
GCGTGAGTGTTGGCACGCAGCACCCTCTCAGAGGCCCACTTTCAAGCAGCTGGTGGAGGC
ACTGGACAAGGTCCTGCTGGCTGTCTCTGAAGAGTACCTTGACCTCCGCTTAACCTTTGG
ACCCTACTCCCCCGCCGGTGGGGACGCCAGCAGCTCCTGCTCCTCCAGCGACTCGGTCTT
CAGCCATGAGCCCCTGCCCCTGGGACCCAGCTCCTTCTTCCCTGGGGTGCAGACGTGAGC
GGTGGCACCAGGTTGTACCAGTAGGCCAGTTGGCAGCCTTGGGTCTCCCGGCTCAGCCAC
AACCTGGTGACCTTGGCAGCCCCAGGTCCTGACTTAAGGGTACTGTCCCAGATTTCTGGT
TCCGCTTTGGGGAGGTCCGTCTCTGGTCCTGGGCTCCCTAGTTGAGACTTCCTGCTCCGG
CCTCAGCTTCTCAAGCCAGAATTCAAGTCGTCTCAAGGCCCTGCCCTTGCCTTAGAGTCA
TGGTCGTAGTGTTCTATTGGCTTTTGAGGTTCTGCTTGGCCTCATGGGCCTTGATGCTTC
GTCCTTGTTCCAGGGCTTCCGTTGGTCCTGGCTGCAGGGTTGTCCTAAATCTCCCTGCTT
CCCTACATCAAGAGAAGTCCTGGCCTCTGAACCCTATTTCCCCAGGCCTCCCCAGCCTCC
CCAGCCTCCCCTCTGCTGCTTGTGCCAGCATCTTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACAATGTGATGAAGATCGCTGACTTTGGGCTGGCCCGAGGCATCCACCATATTGACTA
CTACAAGAAAACAAGCAACGGCCGCCTGCCTGTCAAGTGGATGGCACCTGAGGCCTTGTT
TGACAGAGTCTACACACACCAGAGTGACGTGTGGTCATTTGGGATCCTGCTGTGGGAGAT
CTTTACCCTCGGGGGCTCCCCGTACCCTGGCATCCCCGTGGAGGAGCTGTTCTCGCTGCT
ACGGGAGGGCCATCGGATGGACCGGCCCCCACACTGCCCTCCAGAGTTGTATGGGCTGAT
GCGTGAGTGTTGGCACGCAGCACCCTCTCAGAGGCCCACTTTCAAGCAGCTGGTGGAGGC
ACTGGACAAGGTCCTGCTGGCTGTCTCTGAAGAGTACCTTGACCTCCGCTTAACCTTTGG
ACCCTACTCCCCCGCCGGTGGGGACGCCAGCAGCTCCTGCTCCTCCAGCGACTCGGTCTT
CAGCCATGAGCCCCTGCCCCTGGGACCCAGCTCCTTCTTCCCTGGGGTGCAGACGTGAGC
GGTGGCACCAGGTTGTACCAGTAGGCCAGTTGGCAGCCTTGGGTCTCCCGGCTCAGCCAC
AACCTGGTGACCTTGGCAGCCCCAGGTCCTGACTTAAGGGTACTGTCCCAGATTTCTGGT
TCCGCTTTGGGGAGGTCCGTCTCTGGTCCTGGGCTCCCTAGTTGAGACTTCCTGCTCCGG
CCTCAGCTTCTCAAGCCAGAATTCAAGTCGTCTCAAGGCCCTGCCCTTGCCTTAGAGTCA
TGGTCGTAGTGTTCTATTGGCTTTTGAGGTTCTGCTTGGCCTCATGGGCCTTGATGCTTC
GTCCTTGTTCCAGGGCTTCCGTTGGTCCTGGCTGCAGGGTTGTCCTAAATCTCCCTGCTT
CCCTACATCAAGAGAAGTCCTGGCCTCTGAACCCTATTTCCCCAGGCCTCCCCAGCCTCC
CCAGCCTCCCCTCTGCTGCTTGTGCCAGCATCTTGG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               543-642, + strand, RNAz p=0.970819
               

               
               883-995, - strand, RNAz p=0.99295

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               543-642, + strand, RNAz p=0.970819
               

               
               883-995, - strand, RNAz p=0.99295

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               545-608, + strand, RNAmicro p=0.99692

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               545-608, + strand, RNAmicro p=0.99692

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of NM_022963, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_022963, +

Aligned organism(s): 22 entry(ies)

More info

Aligned organism(s): 22 entry(ies)

Help | Less info


               
               151-297, gnl|bosTau2|chr7 (26677136-26677282)
               

               
               151-297, gnl|canFam2|chr3 (65130542-65130388)
               

               
               151-297, gnl|danRer3|chrUn (61999008-61998859)
               

               
               151-297, gnl|dasNov1|scaffold_1994 (15883-16037)
               

               
               151-297, gnl|echTel1|scaffold_271876 (17133-16979)
               

               
               151-297, gnl|fr1|chrUn (163320099-163319943)
               

               
               151-297, gnl|galGal2|chr4 (83707509-83707355)
               

               
               151-297, gnl|hg17|chr4 (1775495-1775651)
               

               
               151-297, gnl|Hg17|chr5 (176456211-176456357)
               

               
               151-297, gnl|loxAfr1|scaffold_23200 (20968-21122)
               

               
               151-297, gnl|Mm7|chr13 (54249790-54249934)
               

               
               151-297, gnl|mm7|chr5 (32797940-32798096)
               

               
               151-297, gnl|monDom2|scaffold_10 (43731178-43731024)
               

               
               151-297, gnl|oryCun1|scaffold_188203 (15155-15002)
               

               
               151-297, gnl|panTro1|chr3 (1874384-1874540)
               

               
               151-297, gnl|rheMac2|chr1 (2153583-2153427)
               

               
               151-297, gnl|rn3|chr14 (82687073-82686917)
               

               
               151-297, gnl|tetNig1|chr10 (12296021-12296177)
               

               
               151-297, gnl|xenTro1|scaffold_210 (496713-496557)
               


               
               393-995, gnl|bosTau2|chr7 (26677734-26678337)
               

               
               393-995, gnl|Hg17|chr5 (176457132-176457642)
               

               
               393-995, gnl|Mm7|chr13 (54250414-54251032)

Aligned organism(s): 22 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               151-297, gnl|bosTau2|chr7 (26677136-26677282)
               

               
               151-297, gnl|canFam2|chr3 (65130542-65130388)
               

               
               151-297, gnl|danRer3|chrUn (61999008-61998859)
               

               
               151-297, gnl|dasNov1|scaffold_1994 (15883-16037)
               

               
               151-297, gnl|echTel1|scaffold_271876 (17133-16979)
               

               
               151-297, gnl|fr1|chrUn (163320099-163319943)
               

               
               151-297, gnl|galGal2|chr4 (83707509-83707355)
               

               
               151-297, gnl|hg17|chr4 (1775495-1775651)
               

               
               151-297, gnl|Hg17|chr5 (176456211-176456357)
               

               
               151-297, gnl|loxAfr1|scaffold_23200 (20968-21122)
               

               
               151-297, gnl|Mm7|chr13 (54249790-54249934)
               

               
               151-297, gnl|mm7|chr5 (32797940-32798096)
               

               
               151-297, gnl|monDom2|scaffold_10 (43731178-43731024)
               

               
               151-297, gnl|oryCun1|scaffold_188203 (15155-15002)
               

               
               151-297, gnl|panTro1|chr3 (1874384-1874540)
               

               
               151-297, gnl|rheMac2|chr1 (2153583-2153427)
               

               
               151-297, gnl|rn3|chr14 (82687073-82686917)
               

               
               151-297, gnl|tetNig1|chr10 (12296021-12296177)
               

               
               151-297, gnl|xenTro1|scaffold_210 (496713-496557)
               


               
               393-995, gnl|bosTau2|chr7 (26677734-26678337)
               

               
               393-995, gnl|Hg17|chr5 (176457132-176457642)
               

               
               393-995, gnl|Mm7|chr13 (54250414-54251032)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               cli (0.305623)
               

               
               ese (0.253004)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               eje (0.0988338)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (0.305623)
               

               
               ese (0.253004)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               eje (0.0988338)

	543-642, + strand, RNAz p=0.970819
	883-995, - strand, RNAz p=0.99295

	151-297, gnl\|bosTau2\|chr7 (26677136-26677282)
	151-297, gnl\|canFam2\|chr3 (65130542-65130388)
	151-297, gnl\|danRer3\|chrUn (61999008-61998859)
	151-297, gnl\|dasNov1\|scaffold_1994 (15883-16037)
	151-297, gnl\|echTel1\|scaffold_271876 (17133-16979)
	151-297, gnl\|fr1\|chrUn (163320099-163319943)
	151-297, gnl\|galGal2\|chr4 (83707509-83707355)
	151-297, gnl\|hg17\|chr4 (1775495-1775651)
	151-297, gnl\|Hg17\|chr5 (176456211-176456357)
	151-297, gnl\|loxAfr1\|scaffold_23200 (20968-21122)
	151-297, gnl\|Mm7\|chr13 (54249790-54249934)
	151-297, gnl\|mm7\|chr5 (32797940-32798096)
	151-297, gnl\|monDom2\|scaffold_10 (43731178-43731024)
	151-297, gnl\|oryCun1\|scaffold_188203 (15155-15002)
	151-297, gnl\|panTro1\|chr3 (1874384-1874540)
	151-297, gnl\|rheMac2\|chr1 (2153583-2153427)
	151-297, gnl\|rn3\|chr14 (82687073-82686917)
	151-297, gnl\|tetNig1\|chr10 (12296021-12296177)
	151-297, gnl\|xenTro1\|scaffold_210 (496713-496557)

	393-995, gnl\|bosTau2\|chr7 (26677734-26678337)
	393-995, gnl\|Hg17\|chr5 (176457132-176457642)
	393-995, gnl\|Mm7\|chr13 (54250414-54251032)

	cli (0.305623)
	ese (0.253004)
	eye (0.170503)
	nco (0.161734)
	eje (0.0988338)