Ss1.1-rese17c_n24.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGGAGAGCTGCGTGGCCATCAAGACCCTGAAGGGCGGCTACACGGAGCGGCAGCGGCGG GAGTTCCTGAGTGAGGCCTCCATCATGGGCCAGTTTGAGCACCCCAACATCATCCGCCTG GAGGGCGTGGTCACCAACAGCGTGCCCGTCATGATCCTCACGGAGTTCATGGAGAACGGC GCCCTGGACTCCTTCCTGCGGCTGAACGACGGGCATTTCACCGTCATCCAGCTCGTGGGC ATGTTACGGGGCATCGCCTCGGGCATGCGGTACCTCGCGGAGATGAGCTACGTCCACCGA GACCTGGCCGCCCGCAACATCCTGGTCAATAGCAACCTGGTCTGCAAAGTTTCAGACTTG GGCCTCTCCCGATTCTTGGAGGAGAACTCATCTGATCCCACCTACACGAGCTCTCTGGGA GGAAAGATTCCCATCCGATGGACAGCCCCCGAGGCCATTGCCTTCCGGAAGTTCACATCT GCCAGTGATGCCTGGAGCTACGGGATTGTGATGTGGGAAGTCATGTCGTTTGGGGAACGA CCATACTGGGACATGAGCAATCAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGGAGAGCTGCGTGGCCATCAAGACCCTGAAGGGCGGCTACACGGAGCGGCAGCGGCGG GAGTTCCTGAGTGAGGCCTCCATCATGGGCCAGTTTGAGCACCCCAACATCATCCGCCTG GAGGGCGTGGTCACCAACAGCGTGCCCGTCATGATCCTCACGGAGTTCATGGAGAACGGC GCCCTGGACTCCTTCCTGCGGCTGAACGACGGGCATTTCACCGTCATCCAGCTCGTGGGC ATGTTACGGGGCATCGCCTCGGGCATGCGGTACCTCGCGGAGATGAGCTACGTCCACCGA GACCTGGCCGCCCGCAACATCCTGGTCAATAGCAACCTGGTCTGCAAAGTTTCAGACTTG GGCCTCTCCCGATTCTTGGAGGAGAACTCATCTGATCCCACCTACACGAGCTCTCTGGGA GGAAAGATTCCCATCCGATGGACAGCCCCCGAGGCCATTGCCTTCCGGAAGTTCACATCT GCCAGTGATGCCTGGAGCTACGGGATTGTGATGTGGGAAGTCATGTCGTTTGGGGAACGA CCATACTGGGACATGAGCAATCAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 417-535, + strand, RNAz p=0.678886 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 417-535, + strand, RNAz p=0.678886 |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 1-205, gnl|bosTau2|chr25 (32230225-32230429) | |
| 1-205, gnl|Hg17|chr7 (100055220-100055016) | |
| 1-205, gnl|Mm7|chr5 (136284856-136285060) | |
| 13-201, gnl|bosTau2|chr1 (53889880-53889692) | |
| 13-201, gnl|Hg17|chr3 (185780236-185780424) | |
| 13-201, gnl|Mm7|chr16 (20870139-20870327) | |
| 229-380, gnl|bosTau2|chr4 (57689054-57689205) | |
| 229-380, gnl|canFam2|chr16 (9281200-9281053) | |
| 229-380, gnl|danRer3|chr23 (42631916-42632064) | |
| 229-380, gnl|dasNov1|scaffold_7202 (46-190) | |
| 229-380, gnl|echTel1|scaffold_269976 (6161-6308) | |
| 229-380, gnl|fr1|chrUn (102530989-102531143) | |
| 229-380, gnl|galGal2|chr1 (71607344-71607200) | |
| 229-380, gnl|hg17|chr7 (142608731-142608878) | |
| 229-380, gnl|Hg17|chr7 (142608917-142608766) | |
| 229-380, gnl|loxAfr1|scaffold_7748 (21824-21677) | |
| 229-380, gnl|mm7|chr6 (42304262-42304408) | |
| 229-380, gnl|Mm7|chr6 (42304447-42304296) | |
| 229-380, gnl|monDom2|scaffold_7 (2044756-2044908) | |
| 229-380, gnl|oryCun1|scaffold_199785 (31697-31843) | |
| 229-380, gnl|panTro1|chr6 (145409583-145409730) | |
| 229-380, gnl|rheMac2|chr3 (180945645-180945792) | |
| 229-380, gnl|rn3|chr4 (70406764-70406910) | |
| 229-380, gnl|tetNig1|chrUn_random (107866814-107866944) | |
| 229-380, gnl|xenTro1|scaffold_209 (654734-654884) | |
| 417-563, gnl|bosTau2|chr1 (86815617-86815471) | |
| 417-563, gnl|canFam2|chr23 (34958956-34959157) | |
| 417-563, gnl|danRer3|chr23 (29397418-29397264) | |
| 417-563, gnl|dasNov1|scaffold_3117 (88277-88461) | |
| 417-563, gnl|echTel1|scaffold_304411 (199-405) | |
| 417-563, gnl|fr1|chrUn (169125944-169126117) | |
| 417-563, gnl|galGal2|chr9 (9847505-9847331) | |
| 417-563, gnl|hg17|chr3 (136442673-136442874) | |
| 417-563, gnl|Hg17|chr3 (136442687-136442833) | |
| 417-563, gnl|loxAfr1|scaffold_7717 (32311-32110) | |
| 417-563, gnl|mm7|chr9 (101626140-101625939) | |
| 417-563, gnl|Mm7|chr9 (101626124-101625978) | |
| 417-563, gnl|monDom2|scaffold_24 (29498884-29499054) | |
| 417-563, gnl|oryCun1|scaffold_164502 (3678-3472) | |
| 417-563, gnl|panTro1|chr2 (138640796-138640997) | |
| 417-563, gnl|rheMac2|chr2 (152521440-152521241) | |
| 417-563, gnl|rn3|chr8 (106906522-106906321) | |
| 417-563, gnl|tetNig1|chr15 (5391126-5390954) | |
| 417-563, gnl|xenTro1|scaffold_361 (916206-916043) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-205, gnl|bosTau2|chr25 (32230225-32230429) | |
| 1-205, gnl|Hg17|chr7 (100055220-100055016) | |
| 1-205, gnl|Mm7|chr5 (136284856-136285060) | |
| 13-201, gnl|bosTau2|chr1 (53889880-53889692) | |
| 13-201, gnl|Hg17|chr3 (185780236-185780424) | |
| 13-201, gnl|Mm7|chr16 (20870139-20870327) | |
| 229-380, gnl|bosTau2|chr4 (57689054-57689205) | |
| 229-380, gnl|canFam2|chr16 (9281200-9281053) | |
| 229-380, gnl|danRer3|chr23 (42631916-42632064) | |
| 229-380, gnl|dasNov1|scaffold_7202 (46-190) | |
| 229-380, gnl|echTel1|scaffold_269976 (6161-6308) | |
| 229-380, gnl|fr1|chrUn (102530989-102531143) | |
| 229-380, gnl|galGal2|chr1 (71607344-71607200) | |
| 229-380, gnl|hg17|chr7 (142608731-142608878) | |
| 229-380, gnl|Hg17|chr7 (142608917-142608766) | |
| 229-380, gnl|loxAfr1|scaffold_7748 (21824-21677) | |
| 229-380, gnl|mm7|chr6 (42304262-42304408) | |
| 229-380, gnl|Mm7|chr6 (42304447-42304296) | |
| 229-380, gnl|monDom2|scaffold_7 (2044756-2044908) | |
| 229-380, gnl|oryCun1|scaffold_199785 (31697-31843) | |
| 229-380, gnl|panTro1|chr6 (145409583-145409730) | |
| 229-380, gnl|rheMac2|chr3 (180945645-180945792) | |
| 229-380, gnl|rn3|chr4 (70406764-70406910) | |
| 229-380, gnl|tetNig1|chrUn_random (107866814-107866944) | |
| 229-380, gnl|xenTro1|scaffold_209 (654734-654884) | |
| 417-563, gnl|bosTau2|chr1 (86815617-86815471) | |
| 417-563, gnl|canFam2|chr23 (34958956-34959157) | |
| 417-563, gnl|danRer3|chr23 (29397418-29397264) | |
| 417-563, gnl|dasNov1|scaffold_3117 (88277-88461) | |
| 417-563, gnl|echTel1|scaffold_304411 (199-405) | |
| 417-563, gnl|fr1|chrUn (169125944-169126117) | |
| 417-563, gnl|galGal2|chr9 (9847505-9847331) | |
| 417-563, gnl|hg17|chr3 (136442673-136442874) | |
| 417-563, gnl|Hg17|chr3 (136442687-136442833) | |
| 417-563, gnl|loxAfr1|scaffold_7717 (32311-32110) | |
| 417-563, gnl|mm7|chr9 (101626140-101625939) | |
| 417-563, gnl|Mm7|chr9 (101626124-101625978) | |
| 417-563, gnl|monDom2|scaffold_24 (29498884-29499054) | |
| 417-563, gnl|oryCun1|scaffold_164502 (3678-3472) | |
| 417-563, gnl|panTro1|chr2 (138640796-138640997) | |
| 417-563, gnl|rheMac2|chr2 (152521440-152521241) | |
| 417-563, gnl|rn3|chr8 (106906522-106906321) | |
| 417-563, gnl|tetNig1|chr15 (5391126-5390954) | |
| 417-563, gnl|xenTro1|scaffold_361 (916206-916043) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ese (0.126502) | |
| jca (0.11396) |