Ss1.1-rese18c_e15.5
|
AAGAAGGATCTGGACCTCATGCTTCTGGACGACTCACTGCTACCACTGGCCTCCGACCCC
CTCTTCTCCACCATGTCCCCTGAGGCCTCCAAGGCCAGCAGCCGCAGGAGCAGCTTCAGC
ATGGAGGAGGGCGAGGTGCTGTGACCGGGGCTCCGGGGGCAGGCCTGGGGGGGCTGGGAG
GGCCAGGGCCGCTCCCTCCCACCCTCCAGGCTGCACTTGTGTGTGAAGTAGCCCTGCCTC
CCTCCTCCTTGTCGGTCCCCCCGTTTGGACTTAGTGCCCGCTTGGCAGCCTGTGGGGTCG
GGAGCCCCCCACCCACGGGCAGCCCTCCGGATGGGGCTGGGTGGGAGTAGGTTTCAAGCC
GGCTCCTGGAGGTGAAATCGTGAGGGGAAGGGAGGTAAGAAGAGGACCTGGCCTCTGGGT
CTGGCCCCCCCACCAATGGAGGGGGCCTTGTTGAAATAAGGGGTTCAGAAGTTCTTTCCC
TGAGGCAGTGACTGGTCCAGGGGGTGCCCAGGCCTCCTGCCTTTCTGGGACTCCGATGGC
AACAAGCCTGTCCTCCAGCCTGGCACTGTCCCCCGCCCCTGCACAGGTGGGGCACTCCCA
CCCCTCTTTGGTGCTAACAGCTCTCCACCAGGTGATGTGAGGGCGGGGGTGGCCAGAAAG
GGGGGGGCAGTGCTGGGTTCAAGTTAGAGTGTGGGGTCACTGCTGGAAGAGCAGCTCCCC
TCCAAGGCTCCCCACTTTGTGCCTTTAGTAAACACT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AAGAAGGATCTGGACCTCATGCTTCTGGACGACTCACTGCTACCACTGGCCTCCGACCCC
CTCTTCTCCACCATGTCCCCTGAGGCCTCCAAGGCCAGCAGCCGCAGGAGCAGCTTCAGC
ATGGAGGAGGGCGAGGTGCTGTGACCGGGGCTCCGGGGGCAGGCCTGGGGGGGCTGGGAG
GGCCAGGGCCGCTCCCTCCCACCCTCCAGGCTGCACTTGTGTGTGAAGTAGCCCTGCCTC
CCTCCTCCTTGTCGGTCCCCCCGTTTGGACTTAGTGCCCGCTTGGCAGCCTGTGGGGTCG
GGAGCCCCCCACCCACGGGCAGCCCTCCGGATGGGGCTGGGTGGGAGTAGGTTTCAAGCC
GGCTCCTGGAGGTGAAATCGTGAGGGGAAGGGAGGTAAGAAGAGGACCTGGCCTCTGGGT
CTGGCCCCCCCACCAATGGAGGGGGCCTTGTTGAAATAAGGGGTTCAGAAGTTCTTTCCC
TGAGGCAGTGACTGGTCCAGGGGGTGCCCAGGCCTCCTGCCTTTCTGGGACTCCGATGGC
AACAAGCCTGTCCTCCAGCCTGGCACTGTCCCCCGCCCCTGCACAGGTGGGGCACTCCCA
CCCCTCTTTGGTGCTAACAGCTCTCCACCAGGTGATGTGAGGGCGGGGGTGGCCAGAAAG
GGGGGGGCAGTGCTGGGTTCAAGTTAGAGTGTGGGGTCACTGCTGGAAGAGCAGCTCCCC
TCCAAGGCTCCCCACTTTGTGCCTTTAGTAAACACT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
26-134, + strand, RNAmicro p=0.995212 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
26-134, + strand, RNAmicro p=0.995212 |
Human gene identifier and UTR site,
human gene reading direction
|
1-395, gnl|bosTau2|chr23 (13772039-13772445) |
|
1-395, gnl|Hg17|chr6 (41760458-41760046) |
|
1-395, gnl|Mm7|chr17 (45928005-45928403) |
| |
|
560-756, gnl|bosTau2|chr23 (13772605-13772789) |
|
560-756, gnl|canFam2|chr12 (13372020-13372407) |
|
560-756, gnl|hg17|chr6 (41759510-41759834) |
|
560-756, gnl|Hg17|chr6 (41759895-41759704) |
|
560-756, gnl|mm7|chr17 (45928942-45928609) |
|
560-756, gnl|Mm7|chr17 (45928550-45928740) |
|
560-756, gnl|monDom2|scaffold_42 (1360054-1359561) |
|
560-756, gnl|oryCun1|scaffold_211695 (17166-16822) |
|
560-756, gnl|panTro1|chr5 (42333285-42333620) |
|
560-756, gnl|rheMac2|chr4 (41514554-41514889) |
|
560-756, gnl|rn3|chr9 (8664450-8664749) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-395, gnl|bosTau2|chr23 (13772039-13772445) |
|
1-395, gnl|Hg17|chr6 (41760458-41760046) |
|
1-395, gnl|Mm7|chr17 (45928005-45928403) |
| |
|
560-756, gnl|bosTau2|chr23 (13772605-13772789) |
|
560-756, gnl|canFam2|chr12 (13372020-13372407) |
|
560-756, gnl|hg17|chr6 (41759510-41759834) |
|
560-756, gnl|Hg17|chr6 (41759895-41759704) |
|
560-756, gnl|mm7|chr17 (45928942-45928609) |
|
560-756, gnl|Mm7|chr17 (45928550-45928740) |
|
560-756, gnl|monDom2|scaffold_42 (1360054-1359561) |
|
560-756, gnl|oryCun1|scaffold_211695 (17166-16822) |
|
560-756, gnl|panTro1|chr5 (42333285-42333620) |
|
560-756, gnl|rheMac2|chr4 (41514554-41514889) |
|
560-756, gnl|rn3|chr9 (8664450-8664749) |
|
mas (0.210305) |
|
pty (0.142714) |
|
ese (0.126502) |
|
med (0.116252) |
|
mas (0.210305) |
|
pty (0.142714) |
|
ese (0.126502) |
|
med (0.116252) |
