Ss1.1-rese18c_h18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGCCTTCTGAACCGTCTTCTCCTGAACCGGGCAGAGCCAACCTCCCTGCAAAGAGCGAC GATCAGCCTCCACCACCAGATGCAGACGAACCCCAGGACAGCACGGGACACCAACAGAGT CCACTGAAGATAACCAGCTCCCCCGTTTTACCAGTGGGGTCAGCCGTCAATGGCTCCAGA AGTAGTACATCCCCCCCCTCCCCTCTCAACCTTTCCTCATCCAGAAACACACAGGGTTAC TTGTACACGGCAGAGGGCGCAGCCGAAGAGCCCCAAGTAGAACCTCTGGATCTTTCACTA CCAAAGCAGCAGGGAGAGTTACTGGAGAGGTCCACTATCACTAGTGTTTACCAGAACAGT GTTTATTCTGTCCAGGAGGAGCCCTTGAACTTGTCTTGTGCAAAAAAGGAGCCACAAAAG GACAGTTGTGGTACAGACTCAGAACCAGTTGTAAATGTAATCCCACCAAGTGCCAACCCC ATAAACATTGCTATACCTACAGTCACTGCCCAGTTACCCACCATCGTGGCCATTGCCGGC CAGAACAGTGTCCCGTGCTTGCGAGCGCTAGCTGCCAACAAGCAGGCCGTCCTCATCCCC CAGGTGGCATACACATACTCGACGGCCGTCAGCCCCGCGGTCCAGGACGCACCCCTGAAA GTGATCCCGCCAAATGGAAATCAGGATGAAAGGCAAGACACCAGCTCGGAAGGAGTATCC AACGTGGAGGAGCAGAATGACTCGGATTCCACACCACCCAAAAAGAAGATGCGAAAGACA GAAAACGGAATGTATGCCTGCGATTTGTGTGACAAGATTTTCCAAAAGAGTAGCTCACTG TTGAGACATAAATATGAACACACAGGTAAAAGACCTCATGAGTGTGGCATCTGCAAAAAG GCCTTCAAACACAAGCATCACTTGATCGAACACATGCGCTTGCATTCTGGAGAGAAGCCC TACCAATGTGACAAGTGCGGGAAGCGCTTCTCGCACTCGGGCTCCTACTCCCAGCACATG AACCACCGCTACTCCTACTGCAAGCGGGAGGCAGAGGAGCGGGACGCAGGCCCCGAGGAC GCAGGCCCGGGGGGCCTGGCCGAGCACGAGCACGCGGGGGCCCGCGCATCCCCATCACAG GGCGACTCGGACGAGAGGGAGAGCTCGACGCGGGAAGAGGATGAAGACAGCGACAAGGAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGCCTTCTGAACCGTCTTCTCCTGAACCGGGCAGAGCCAACCTCCCTGCAAAGAGCGAC GATCAGCCTCCACCACCAGATGCAGACGAACCCCAGGACAGCACGGGACACCAACAGAGT CCACTGAAGATAACCAGCTCCCCCGTTTTACCAGTGGGGTCAGCCGTCAATGGCTCCAGA AGTAGTACATCCCCCCCCTCCCCTCTCAACCTTTCCTCATCCAGAAACACACAGGGTTAC TTGTACACGGCAGAGGGCGCAGCCGAAGAGCCCCAAGTAGAACCTCTGGATCTTTCACTA CCAAAGCAGCAGGGAGAGTTACTGGAGAGGTCCACTATCACTAGTGTTTACCAGAACAGT GTTTATTCTGTCCAGGAGGAGCCCTTGAACTTGTCTTGTGCAAAAAAGGAGCCACAAAAG GACAGTTGTGGTACAGACTCAGAACCAGTTGTAAATGTAATCCCACCAAGTGCCAACCCC ATAAACATTGCTATACCTACAGTCACTGCCCAGTTACCCACCATCGTGGCCATTGCCGGC CAGAACAGTGTCCCGTGCTTGCGAGCGCTAGCTGCCAACAAGCAGGCCGTCCTCATCCCC CAGGTGGCATACACATACTCGACGGCCGTCAGCCCCGCGGTCCAGGACGCACCCCTGAAA GTGATCCCGCCAAATGGAAATCAGGATGAAAGGCAAGACACCAGCTCGGAAGGAGTATCC AACGTGGAGGAGCAGAATGACTCGGATTCCACACCACCCAAAAAGAAGATGCGAAAGACA GAAAACGGAATGTATGCCTGCGATTTGTGTGACAAGATTTTCCAAAAGAGTAGCTCACTG TTGAGACATAAATATGAACACACAGGTAAAAGACCTCATGAGTGTGGCATCTGCAAAAAG GCCTTCAAACACAAGCATCACTTGATCGAACACATGCGCTTGCATTCTGGAGAGAAGCCC TACCAATGTGACAAGTGCGGGAAGCGCTTCTCGCACTCGGGCTCCTACTCCCAGCACATG AACCACCGCTACTCCTACTGCAAGCGGGAGGCAGAGGAGCGGGACGCAGGCCCCGAGGAC GCAGGCCCGGGGGGCCTGGCCGAGCACGAGCACGCGGGGGCCCGCGCATCCCCATCACAG GGCGACTCGGACGAGAGGGAGAGCTCGACGCGGGAAGAGGATGAAGACAGCGACAAGGAG |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 903-1062, - strand, RNAz p=0.749799 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 903-1062, - strand, RNAz p=0.749799 |
| Predicted microRNA(s): 1 entry(ies) | More info |
| Predicted microRNA(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 968-1050, - strand, RNAmicro p=0.947795 |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 863-1067, gnl|bosTau2|chr2 (35501908-35501704) | |
| 863-1067, gnl|canFam2|chr19 (49445685-49446137) | |
| 863-1067, gnl|canFam2|chr19 (49445794-49446127) | |
| 863-1067, gnl|danRer3|chr9 (6078336-6077890) | |
| 863-1067, gnl|danRer3|chr9 (25633160-25633513) | |
| 863-1067, gnl|dasNov1|scaffold_1806 (91253-90801) | |
| 863-1067, gnl|dasNov1|scaffold_1806 (91144-90811) | |
| 863-1067, gnl|echTel1|scaffold_296448 (88097-88549) | |
| 863-1067, gnl|echTel1|scaffold_296448 (88206-88538) | |
| 863-1067, gnl|fr1|chrUn (303342065-303341598) | |
| 863-1067, gnl|fr1|chrUn (303341952-303341608) | |
| 863-1067, gnl|galGal2|chr7 (33977597-33978049) | |
| 863-1067, gnl|galGal2|chr7 (33977706-33978039) | |
| 863-1067, gnl|hg17|chr2 (144980879-144981331) | |
| 863-1067, gnl|Hg17|chr2 (144981330-144981126) | |
| 863-1067, gnl|hg17|chr4 (16038818-16039148) | |
| 863-1067, gnl|loxAfr1|scaffold_2660 (35654-36106) | |
| 863-1067, gnl|loxAfr1|scaffold_2660 (35763-36096) | |
| 863-1067, gnl|mm7|chr2 (44996016-44996468) | |
| 863-1067, gnl|mm7|chr2 (44996125-44996458) | |
| 863-1067, gnl|Mm7|chr2 (44996467-44996263) | |
| 863-1067, gnl|monDom2|scaffold_2 (33253447-33253899) | |
| 863-1067, gnl|monDom2|scaffold_2 (33253556-33253889) | |
| 863-1067, gnl|oryCun1|scaffold_209430 (87207-87660) | |
| 863-1067, gnl|oryCun1|scaffold_209430 (87316-87650) | |
| 863-1067, gnl|panTro1|chr13 (34019188-34019640) | |
| 863-1067, gnl|panTro1|chr3 (16387500-16387830) | |
| 863-1067, gnl|rheMac2|chr12 (7921376-7921828) | |
| 863-1067, gnl|rheMac2|chr5 (11179451-11179776) | |
| 863-1067, gnl|rn3|chr3 (25409513-25409965) | |
| 863-1067, gnl|rn3|chr3 (25409622-25409955) | |
| 863-1067, gnl|tetNig1|chr3 (490057-490509) | |
| 863-1067, gnl|tetNig1|chr3 (490170-490499) | |
| 863-1067, gnl|xenTro1|scaffold_216 (1367596-1367144) | |
| 863-1067, gnl|xenTro1|scaffold_216 (1367487-1367155) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 863-1067, gnl|bosTau2|chr2 (35501908-35501704) | |
| 863-1067, gnl|canFam2|chr19 (49445685-49446137) | |
| 863-1067, gnl|canFam2|chr19 (49445794-49446127) | |
| 863-1067, gnl|danRer3|chr9 (6078336-6077890) | |
| 863-1067, gnl|danRer3|chr9 (25633160-25633513) | |
| 863-1067, gnl|dasNov1|scaffold_1806 (91253-90801) | |
| 863-1067, gnl|dasNov1|scaffold_1806 (91144-90811) | |
| 863-1067, gnl|echTel1|scaffold_296448 (88097-88549) | |
| 863-1067, gnl|echTel1|scaffold_296448 (88206-88538) | |
| 863-1067, gnl|fr1|chrUn (303342065-303341598) | |
| 863-1067, gnl|fr1|chrUn (303341952-303341608) | |
| 863-1067, gnl|galGal2|chr7 (33977597-33978049) | |
| 863-1067, gnl|galGal2|chr7 (33977706-33978039) | |
| 863-1067, gnl|hg17|chr2 (144980879-144981331) | |
| 863-1067, gnl|Hg17|chr2 (144981330-144981126) | |
| 863-1067, gnl|hg17|chr4 (16038818-16039148) | |
| 863-1067, gnl|loxAfr1|scaffold_2660 (35654-36106) | |
| 863-1067, gnl|loxAfr1|scaffold_2660 (35763-36096) | |
| 863-1067, gnl|mm7|chr2 (44996016-44996468) | |
| 863-1067, gnl|mm7|chr2 (44996125-44996458) | |
| 863-1067, gnl|Mm7|chr2 (44996467-44996263) | |
| 863-1067, gnl|monDom2|scaffold_2 (33253447-33253899) | |
| 863-1067, gnl|monDom2|scaffold_2 (33253556-33253889) | |
| 863-1067, gnl|oryCun1|scaffold_209430 (87207-87660) | |
| 863-1067, gnl|oryCun1|scaffold_209430 (87316-87650) | |
| 863-1067, gnl|panTro1|chr13 (34019188-34019640) | |
| 863-1067, gnl|panTro1|chr3 (16387500-16387830) | |
| 863-1067, gnl|rheMac2|chr12 (7921376-7921828) | |
| 863-1067, gnl|rheMac2|chr5 (11179451-11179776) | |
| 863-1067, gnl|rn3|chr3 (25409513-25409965) | |
| 863-1067, gnl|rn3|chr3 (25409622-25409955) | |
| 863-1067, gnl|tetNig1|chr3 (490057-490509) | |
| 863-1067, gnl|tetNig1|chr3 (490170-490499) | |
| 863-1067, gnl|xenTro1|scaffold_216 (1367596-1367144) | |
| 863-1067, gnl|xenTro1|scaffold_216 (1367487-1367155) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| jca (0.22792) | |
| nms (0.213858) | |
| tbr (0.154178) | |
| spl (0.143184) | |
| che (0.136314) | |
| ssp (0.13552) | |
| ese (0.126502) | |
| bla (0.124347) | |
| ebs (0.118301) | |
| ldo (0.0970026) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jca (0.22792) | |
| nms (0.213858) | |
| tbr (0.154178) | |
| spl (0.143184) | |
| che (0.136314) | |
| ssp (0.13552) | |
| ese (0.126502) | |
| bla (0.124347) | |
| ebs (0.118301) | |
| ldo (0.0970026) |