Non-Coding RNA Search

Ss1.1-rese18c_i23.5

Sequence:


               
               CTCACTTCAGGTGTTGTGGATCTAGGACAAGGAGCAGACTGGTTGGACAGGGAGCTGGGA
GGCTGCGAGCAGGCAGCTCCTGGGCCAGACAGACTTACCTGCCTGCCAGAGGCAGCCAGT
GCTTCTTGCCCCTACCCAGACCTCCAGCCCAGTGAGGCTCTGGAGGAGGCCCATGGGAAC
AGCTGCCCACCAAAGGCCCCCTGCCCTCCAGGAGCCAGTCCAGGCCTGCCTAGAGCCCCA
GTCTCCTCCTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCACTTCAGGTGTTGTGGATCTAGGACAAGGAGCAGACTGGTTGGACAGGGAGCTGGGA
GGCTGCGAGCAGGCAGCTCCTGGGCCAGACAGACTTACCTGCCTGCCAGAGGCAGCCAGT
GCTTCTTGCCCCTACCCAGACCTCCAGCCCAGTGAGGCTCTGGAGGAGGCCCATGGGAAC
AGCTGCCCACCAAAGGCCCCCTGCCCTCCAGGAGCCAGTCCAGGCCTGCCTAGAGCCCCA
GTCTCCTCCTCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61883291|ref|XP_591260.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61883291|ref|XP_591260.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-251, - strand, RNAz p=0.886149

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-251, - strand, RNAz p=0.886149

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-251, gnl|bosTau2|chr10 (8763725-8763475)
               

               
               1-251, gnl|canFam2|chr30 (32742815-32743166)
               

               
               1-251, gnl|dasNov1|scaffold_96012 (1205-877)
               

               
               1-251, gnl|echTel1|scaffold_288691 (15956-16280)
               

               
               1-251, gnl|hg17|chr15 (63463229-63463574)
               

               
               1-251, gnl|Hg17|chr15 (63463657-63463410)
               

               
               1-251, gnl|loxAfr1|scaffold_31784 (19857-20196)
               

               
               1-251, gnl|mm7|chr9 (65165297-65164991)
               

               
               1-251, gnl|Mm7|chr9 (65164906-65165150)
               

               
               1-251, gnl|monDom2|scaffold_12 (47794165-47793783)
               

               
               1-251, gnl|oryCun1|scaffold_195575 (56139-56458)
               

               
               1-251, gnl|panTro1|chr16 (63952167-63952512)
               

               
               1-251, gnl|rheMac2|chr7 (43870624-43870969)
               

               
               1-251, gnl|rn3|chr8 (69400619-69400314)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-251, gnl|bosTau2|chr10 (8763725-8763475)
               

               
               1-251, gnl|canFam2|chr30 (32742815-32743166)
               

               
               1-251, gnl|dasNov1|scaffold_96012 (1205-877)
               

               
               1-251, gnl|echTel1|scaffold_288691 (15956-16280)
               

               
               1-251, gnl|hg17|chr15 (63463229-63463574)
               

               
               1-251, gnl|Hg17|chr15 (63463657-63463410)
               

               
               1-251, gnl|loxAfr1|scaffold_31784 (19857-20196)
               

               
               1-251, gnl|mm7|chr9 (65165297-65164991)
               

               
               1-251, gnl|Mm7|chr9 (65164906-65165150)
               

               
               1-251, gnl|monDom2|scaffold_12 (47794165-47793783)
               

               
               1-251, gnl|oryCun1|scaffold_195575 (56139-56458)
               

               
               1-251, gnl|panTro1|chr16 (63952167-63952512)
               

               
               1-251, gnl|rheMac2|chr7 (43870624-43870969)
               

               
               1-251, gnl|rn3|chr8 (69400619-69400314)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ese (0.126502)
               

               
               eru (0.120048)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.126502)
               

               
               eru (0.120048)

	1-251, gnl\|bosTau2\|chr10 (8763725-8763475)
	1-251, gnl\|canFam2\|chr30 (32742815-32743166)
	1-251, gnl\|dasNov1\|scaffold_96012 (1205-877)
	1-251, gnl\|echTel1\|scaffold_288691 (15956-16280)
	1-251, gnl\|hg17\|chr15 (63463229-63463574)
	1-251, gnl\|Hg17\|chr15 (63463657-63463410)
	1-251, gnl\|loxAfr1\|scaffold_31784 (19857-20196)
	1-251, gnl\|mm7\|chr9 (65165297-65164991)
	1-251, gnl\|Mm7\|chr9 (65164906-65165150)
	1-251, gnl\|monDom2\|scaffold_12 (47794165-47793783)
	1-251, gnl\|oryCun1\|scaffold_195575 (56139-56458)
	1-251, gnl\|panTro1\|chr16 (63952167-63952512)
	1-251, gnl\|rheMac2\|chr7 (43870624-43870969)
	1-251, gnl\|rn3\|chr8 (69400619-69400314)