Non-Coding RNA Search

Ss1.1-rese19c_c15.5

Sequence:


               
               TGGACAGTTTTATTCTATCATCCACAAATACTGGCAATTCCCTTCCCCCTCTTCAAACAT
TCTAACTTTTATCCTATTTTATTGTCTTATTTTACTATTTCAGACTAGAACTTCTAGAGT
AATATTTAATAGAAGCACTGATAACAGACATTCTTGTTTGTTCCCAGGGCTGAATGAAAT
GCTTCAGATGTTTCACCAAGTATAATCATTGCTATAGGCTTTTGGTAGATTCCTTTCCTT
TCTTATGTTGGGTGTTGAATTTTATCGTTTTTTTCCTACATCTATTGAGATGAGCATTTG
ACTTTTTTCTTTAATCTGTTCTTATGCGAGTTGCATTAATACATTTTCTAATGTTAAACC
ATCTTGTCATTTCTTGGATTAAACCCATGATTCTTGGCCATGATGTATTTTTGGTTCTTG
TTATCCTTGAAGGATTTGATTTTTATCTAGGGTTTTTATGTCTCTGTACAATAGTGGCCA
TTAATTTTCCTTTCTCCTTCTTTCTTTCTCCAGTTTTGACATTTTGGTAATTTTCAAAGA
ATGAGTTTGAGTCTTTCTCCCCCTTTCTATTTTCTGGAAGAGTGTGTGTAAGAGAATAGA
AGGGTCATTAGAGCCTCTCTGTAGAATTGGTCTGGTAGAGTTTTTTGATGAACAGATTTA
AAACTATTGTATCAATTCCTTTATGATACAGTTTTACACTTGATTTTTTTTTTCTTTCTT
GACTAAGTTTCAGTAAGCTGTATATTTCTAGGAAATTAAGCATTTTCTAGGAAATTATCT
GTATTTTTAATTGTTGAGTGGGTATAAGCAGGCCTTTTGTGGTTCTAAAAAAAAATCTGT
TGTGTATGGAACATGATGGAGGATAATGTGGGGAAAAAAAGAATATATAAATGTATAACT
GGGTCACTTTGCTGTATGGCAGAAATTGACAACATTGTAAATCAGCTATAATAAAATTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGACAGTTTTATTCTATCATCCACAAATACTGGCAATTCCCTTCCCCCTCTTCAAACAT
TCTAACTTTTATCCTATTTTATTGTCTTATTTTACTATTTCAGACTAGAACTTCTAGAGT
AATATTTAATAGAAGCACTGATAACAGACATTCTTGTTTGTTCCCAGGGCTGAATGAAAT
GCTTCAGATGTTTCACCAAGTATAATCATTGCTATAGGCTTTTGGTAGATTCCTTTCCTT
TCTTATGTTGGGTGTTGAATTTTATCGTTTTTTTCCTACATCTATTGAGATGAGCATTTG
ACTTTTTTCTTTAATCTGTTCTTATGCGAGTTGCATTAATACATTTTCTAATGTTAAACC
ATCTTGTCATTTCTTGGATTAAACCCATGATTCTTGGCCATGATGTATTTTTGGTTCTTG
TTATCCTTGAAGGATTTGATTTTTATCTAGGGTTTTTATGTCTCTGTACAATAGTGGCCA
TTAATTTTCCTTTCTCCTTCTTTCTTTCTCCAGTTTTGACATTTTGGTAATTTTCAAAGA
ATGAGTTTGAGTCTTTCTCCCCCTTTCTATTTTCTGGAAGAGTGTGTGTAAGAGAATAGA
AGGGTCATTAGAGCCTCTCTGTAGAATTGGTCTGGTAGAGTTTTTTGATGAACAGATTTA
AAACTATTGTATCAATTCCTTTATGATACAGTTTTACACTTGATTTTTTTTTTCTTTCTT
GACTAAGTTTCAGTAAGCTGTATATTTCTAGGAAATTAAGCATTTTCTAGGAAATTATCT
GTATTTTTAATTGTTGAGTGGGTATAAGCAGGCCTTTTGTGGTTCTAAAAAAAAATCTGT
TGTGTATGGAACATGATGGAGGATAATGTGGGGAAAAAAAGAATATATAAATGTATAACT
GGGTCACTTTGCTGTATGGCAGAAATTGACAACATTGTAAATCAGCTATAATAAAATTTT

Aligned organism(s): 1 entry(ies)

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Aligned organism(s): 1 entry(ies)

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               1-845, gnl|bosTau2|chr1 (29801163-29802023)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-845, gnl|bosTau2|chr1 (29801163-29802023)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               ece (0.229305)
               

               
               cut (0.169924)
               

               
               ese (0.126502)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               cut (0.169924)
               

               
               ese (0.126502)