Non-Coding RNA Search

Ss1.1-rese19c_f17.5

Sequence:


               
               CACAGCCGAGTGCCACTGGAATCAGATAAGTCAGCAGAGAAGATGCTGGAGTCTGGGGGG
CCACAGCCCAGCGGGGGACCCCCACTCAGAGCCTCCAGCCAATCCAAGGAGTCTGTGGGG
CCCCTGGGAGAGTGGGACAGGGAGTTCGTGGGGGATGGGATTGAGGAAGAGAAAACAGAT
GAGAGGCCTTCAGAGTCTGGGGAGGGGGACAGCACGTCGAAGGAGCCAGGAAAGTCCAGG
GGGATGGGGGGCAGTGGGTCTGCAGGAGAAGGAATGTATTGTGAGTTTAAGAAGGCAGCG
ATCCCTCCCAGCTCCCTATTCTTCCTTTCCAGAAGTTTAGGTATCCAGCCCACTCCTCCT
TAGGACCCAGGAATTCAGACACCAACCTGTCCCTCCCTCAGACCCAGAAGCCCAGAACCT
CAGCCCAAAGCTCAGAGTTCGGCTGGGCCCCTCAGGTTCCACTTGATCCTCTAGGATGTC
ATCGATGCCCCGGTTCGGAAGCAGCTGCGCTCTGCGGATCGCTTCCTGCAGCTCCTCCTC
CAGTGTCAGGGCTGTCGAGGCTGGTGCTGAGAAAGGGATCGGCGCTGGAGCCGGAGCCGT
CGTCGCAGGCGGAGCCGGAGCCGGAGCCATCATAACGGTTTCCGCGGCATGTGGAGGAGG
AGGAGGCGAGTGAGGTGTTGGACTCGGCTTGAACGAGAACCGCCGAGAGGGAGAGTTTCT
AGCTTTGGCCCTGAAGCGTGGCCAGGGAGCATCCAGGGGACTGTCCTCGCGCCGCGGCTT
TGGCCGCTCGCGGGGCGGGGCACCGCCGCGCATGCGCTCCAGGAGCATCGACTTCGTCCC
AGACACCGGGAGGCCCCGCAGGCGCAGCTGCTGTCGGAGCTCTGAGACCGTCAGCTCCTC
CAGTTTGAGGGTCTGAAGTTCCAACTTGTGTGAAGGGGGCGAGGGACCGGAGACTCCTGG
TGGGGAGGAAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACAGCCGAGTGCCACTGGAATCAGATAAGTCAGCAGAGAAGATGCTGGAGTCTGGGGGG
CCACAGCCCAGCGGGGGACCCCCACTCAGAGCCTCCAGCCAATCCAAGGAGTCTGTGGGG
CCCCTGGGAGAGTGGGACAGGGAGTTCGTGGGGGATGGGATTGAGGAAGAGAAAACAGAT
GAGAGGCCTTCAGAGTCTGGGGAGGGGGACAGCACGTCGAAGGAGCCAGGAAAGTCCAGG
GGGATGGGGGGCAGTGGGTCTGCAGGAGAAGGAATGTATTGTGAGTTTAAGAAGGCAGCG
ATCCCTCCCAGCTCCCTATTCTTCCTTTCCAGAAGTTTAGGTATCCAGCCCACTCCTCCT
TAGGACCCAGGAATTCAGACACCAACCTGTCCCTCCCTCAGACCCAGAAGCCCAGAACCT
CAGCCCAAAGCTCAGAGTTCGGCTGGGCCCCTCAGGTTCCACTTGATCCTCTAGGATGTC
ATCGATGCCCCGGTTCGGAAGCAGCTGCGCTCTGCGGATCGCTTCCTGCAGCTCCTCCTC
CAGTGTCAGGGCTGTCGAGGCTGGTGCTGAGAAAGGGATCGGCGCTGGAGCCGGAGCCGT
CGTCGCAGGCGGAGCCGGAGCCGGAGCCATCATAACGGTTTCCGCGGCATGTGGAGGAGG
AGGAGGCGAGTGAGGTGTTGGACTCGGCTTGAACGAGAACCGCCGAGAGGGAGAGTTTCT
AGCTTTGGCCCTGAAGCGTGGCCAGGGAGCATCCAGGGGACTGTCCTCGCGCCGCGGCTT
TGGCCGCTCGCGGGGCGGGGCACCGCCGCGCATGCGCTCCAGGAGCATCGACTTCGTCCC
AGACACCGGGAGGCCCCGCAGGCGCAGCTGCTGTCGGAGCTCTGAGACCGTCAGCTCCTC
CAGTTTGAGGGTCTGAAGTTCCAACTTGTGTGAAGGGGGCGAGGGACCGGAGACTCCTGG
TGGGGAGGAAGT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q8N9Y3_HUMAN

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q8N9Y3_HUMAN

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               40-239, + strand, RNAz p=0.911826

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-239, + strand, RNAz p=0.911826

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-379, gnl|bosTau2|chr18 (49905904-49906284)
               

               
               1-379, gnl|Hg17|chr19 (53908361-53908740)
               

               
               1-379, gnl|Mm7|chr7 (41821058-41820708)
               


               
               721-889, gnl|bosTau2|chr18 (49906982-49907150)
               

               
               721-889, gnl|Hg17|chr19 (53909462-53909630)
               

               
               721-889, gnl|Mm7|chr7 (41819758-41819590)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-379, gnl|bosTau2|chr18 (49905904-49906284)
               

               
               1-379, gnl|Hg17|chr19 (53908361-53908740)
               

               
               1-379, gnl|Mm7|chr7 (41821058-41820708)
               


               
               721-889, gnl|bosTau2|chr18 (49906982-49907150)
               

               
               721-889, gnl|Hg17|chr19 (53909462-53909630)
               

               
               721-889, gnl|Mm7|chr7 (41819758-41819590)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               pgl (0.236967)
               

               
               mas (0.210305)
               

               
               ese (0.126502)
               

               
               eru (0.120048)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.236967)
               

               
               mas (0.210305)
               

               
               ese (0.126502)
               

               
               eru (0.120048)

	1-379, gnl\|bosTau2\|chr18 (49905904-49906284)
	1-379, gnl\|Hg17\|chr19 (53908361-53908740)
	1-379, gnl\|Mm7\|chr7 (41821058-41820708)

	721-889, gnl\|bosTau2\|chr18 (49906982-49907150)
	721-889, gnl\|Hg17\|chr19 (53909462-53909630)
	721-889, gnl\|Mm7\|chr7 (41819758-41819590)