Non-Coding RNA Search

Ss1.1-rese22c_e10.5

Sequence:


               
               CCAGGTCTCTTCAGCCCCGCCGGCCACACGGCTCCCATCTCCTCCCACTGGCCACCCAGC
TCCACAATGATGGCCGAGGAGCGCACAGACCTGGAGGCCCAGATCGTCAAGGACATTCAC
TTCAAGGAGATCGACCTGGTGAACCGGGACCCCAAGAACATTAACGAGGACATAGTGAAG
GTGGACTTCGAGGATGTGATTGCGGAGCCAGTGGGCACCTACAGCTTCGACGGCGTGTGG
AAGGTGAGCTACACCACCTTCACCGTGTCCAAGTATTGGTGCTACCGCCTGCTGTCCACG
CTGCTGGGCGTGCCGCTGGCCCTGCTCTGGGGCTTCCTGTTCGCCTGCATCTCCTTCTGC
CACATCTGGGCGGTGGTGCCATGCATCAAGAGCTACCTGATCGAGATCCAGTGCATCAGC
CATATCTACTCACTCTGCATCCGCACCTTCTGCAACCCAGTCTTTGCCGCCCTGGGTCAG
GTCTGCAGCAACATCAAGGTGATGCTGCGGAAAGAAGTGTAAGGCCGGGTGGGTGAAGGG
GGGGGATGGCGAGGGCAGGGGAACCCAGGCCAAGCTGCCCTCCCCGGTACTGCTCCAAGG
GGCTGCCGGCAAGCCCGCTCTCCTTCCCCCAAGACTGCTGCTTCCCCCAGATGGGGGCTC
ACAGTATAGGGAAGCCAGAGAGGAAAGACAGCCCGACCACGAGTGCCGCGGCCTTCCCTC
TGTCCCCTGCCCCGCCACAAGGCCCCCGTTGGGCACCAGGGAAGATGATTTGCTAAGAGG
CAGCTACCACAAATATTTGCATTCACTTGTACTGTAACAGCATAAACCAGCACTCAGTTC
CCATCCAGGACGCACCCACCCAGGGACTGTTGGCCTTAGGAGGGTGGCTCCAATAAAGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGGTCTCTTCAGCCCCGCCGGCCACACGGCTCCCATCTCCTCCCACTGGCCACCCAGC
TCCACAATGATGGCCGAGGAGCGCACAGACCTGGAGGCCCAGATCGTCAAGGACATTCAC
TTCAAGGAGATCGACCTGGTGAACCGGGACCCCAAGAACATTAACGAGGACATAGTGAAG
GTGGACTTCGAGGATGTGATTGCGGAGCCAGTGGGCACCTACAGCTTCGACGGCGTGTGG
AAGGTGAGCTACACCACCTTCACCGTGTCCAAGTATTGGTGCTACCGCCTGCTGTCCACG
CTGCTGGGCGTGCCGCTGGCCCTGCTCTGGGGCTTCCTGTTCGCCTGCATCTCCTTCTGC
CACATCTGGGCGGTGGTGCCATGCATCAAGAGCTACCTGATCGAGATCCAGTGCATCAGC
CATATCTACTCACTCTGCATCCGCACCTTCTGCAACCCAGTCTTTGCCGCCCTGGGTCAG
GTCTGCAGCAACATCAAGGTGATGCTGCGGAAAGAAGTGTAAGGCCGGGTGGGTGAAGGG
GGGGGATGGCGAGGGCAGGGGAACCCAGGCCAAGCTGCCCTCCCCGGTACTGCTCCAAGG
GGCTGCCGGCAAGCCCGCTCTCCTTCCCCCAAGACTGCTGCTTCCCCCAGATGGGGGCTC
ACAGTATAGGGAAGCCAGAGAGGAAAGACAGCCCGACCACGAGTGCCGCGGCCTTCCCTC
TGTCCCCTGCCCCGCCACAAGGCCCCCGTTGGGCACCAGGGAAGATGATTTGCTAAGAGG
CAGCTACCACAAATATTTGCATTCACTTGTACTGTAACAGCATAAACCAGCACTCAGTTC
CCATCCAGGACGCACCCACCCAGGGACTGTTGGCCTTAGGAGGGTGGCTCCAATAAAGGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|46854792|gb|AAH69368.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|46854792|gb|AAH69368.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               176-294, - strand, RNAz p=0.602532
               

               
               455-565, + strand, RNAz p=0.999203

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               176-294, - strand, RNAz p=0.602532
               

               
               455-565, + strand, RNAz p=0.999203

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AF043101, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AF043101, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               176-565, gnl|bosTau2|chr22 (14331669-14332056)
               

               
               176-565, gnl|Hg17|chr3 (8762207-8762602)
               

               
               176-565, gnl|Mm7|chr6 (112633182-112633560)
               


               
               588-900, gnl|bosTau2|chr22 (14332057-14332387)
               

               
               588-900, gnl|Hg17|chr3 (8762603-8762951)
               

               
               588-900, gnl|Mm7|chr6 (112633561-112633938)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               176-565, gnl|bosTau2|chr22 (14331669-14332056)
               

               
               176-565, gnl|Hg17|chr3 (8762207-8762602)
               

               
               176-565, gnl|Mm7|chr6 (112633182-112633560)
               


               
               588-900, gnl|bosTau2|chr22 (14332057-14332387)
               

               
               588-900, gnl|Hg17|chr3 (8762603-8762951)
               

               
               588-900, gnl|Mm7|chr6 (112633561-112633938)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ese (0.253004)
               

               
               nms (0.213858)
               

               
               hlv (0.139256)
               

               
               eru (0.120048)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.253004)
               

               
               nms (0.213858)
               

               
               hlv (0.139256)
               

               
               eru (0.120048)

	176-294, - strand, RNAz p=0.602532
	455-565, + strand, RNAz p=0.999203

	176-565, gnl\|bosTau2\|chr22 (14331669-14332056)
	176-565, gnl\|Hg17\|chr3 (8762207-8762602)
	176-565, gnl\|Mm7\|chr6 (112633182-112633560)

	588-900, gnl\|bosTau2\|chr22 (14332057-14332387)
	588-900, gnl\|Hg17\|chr3 (8762603-8762951)
	588-900, gnl\|Mm7\|chr6 (112633561-112633938)