Non-Coding RNA Search

Ss1.1-rese22c_n19.5

Sequence:


               
               GGAAGGAGGAGCTCAGGGAAGTCCAGAAGGAAAGAGGAGGAGAATTCCAAAGAAGTTTCT
TTTAGAATAACTGGGGAGAAGAGGAGGTTTGACAGAGACGCAACAGGGAGACCAGATGGG
TTTCTCTAGAGTGTGAGTATTTGGGGGTGGGTTCCTGGGTCTACAGAAGCCTCCCTGAGT
CCATATTGCCCCTCCCAATCAGTGGTCTTGAGCCAACAGCGAAGGCATCTCCAACTTCTT
CGGATCCGTCAGCAAGAAGCCAAGTGGCATCGGACCTCCCCTGGTGTGGGGCTCTGCGAG
GGCAGCTACCGGCGCCAGCTCCCTGCCAGCGCCCGGAGCCCTGCTGACAGTCTGGCTCCA
AGTTATCTCCAGAGCCTTCGAGAGCGCCAGCTGGGACCAGGCACCCAGGCCACAGCCCCC
CACACTGTCCTGGACCTGGATTCTGACTGTGGTTCCACTGTACCCCTCACCACACCTGGT
TCCACCCGGACCTGAGCCTAAACCTCCACCGATGGCCTTTACCCCACCAAGGACCTGGGA
ACACTAGGTGGGCAGGGCCTGAGGGCATAAGACCCCCACACAAATTTCCCCACCTCTTGG
ACTTGGGGATGGAATCTGTGCTCCAACCCAGACCAGCTCTCTAGGGATATGTTTCAGGGA
CAGATAGAGAGGAATCTGTGGGAAGGGAGAGGAATGGAAGTATGAGTACCTACCTCTGTC
CAGTAATAGAGGTGCCCGGGTCCCTAAGGTACTGACTCCCTAATTCCCTCCAAAGCAAAC
CAAGGAGGGCTGTTACCCAAATAGCCTTCTGTATACCCACATCAGTGTGCCTCGCAACAG
TAAAATAAGGTGTTTGTTTTTGTAGGACCTATAGAAAATCAAGAAGCCTCCTAAGCTTTT
TGCTGGGGAGAAGGGCAGCAGAGGAGTTCCAGGATCCCTTAATCCCCAGGCGGTTGGCTT
CCTGGTTAGCCTTTCCCTCTGGACCTCATAGGCTCAATCCCCCTTCTCCTACCTCAGTTG
GTGGTACTGACTGTCCTCCATGGTGCTTCCCTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAGGAGGAGCTCAGGGAAGTCCAGAAGGAAAGAGGAGGAGAATTCCAAAGAAGTTTCT
TTTAGAATAACTGGGGAGAAGAGGAGGTTTGACAGAGACGCAACAGGGAGACCAGATGGG
TTTCTCTAGAGTGTGAGTATTTGGGGGTGGGTTCCTGGGTCTACAGAAGCCTCCCTGAGT
CCATATTGCCCCTCCCAATCAGTGGTCTTGAGCCAACAGCGAAGGCATCTCCAACTTCTT
CGGATCCGTCAGCAAGAAGCCAAGTGGCATCGGACCTCCCCTGGTGTGGGGCTCTGCGAG
GGCAGCTACCGGCGCCAGCTCCCTGCCAGCGCCCGGAGCCCTGCTGACAGTCTGGCTCCA
AGTTATCTCCAGAGCCTTCGAGAGCGCCAGCTGGGACCAGGCACCCAGGCCACAGCCCCC
CACACTGTCCTGGACCTGGATTCTGACTGTGGTTCCACTGTACCCCTCACCACACCTGGT
TCCACCCGGACCTGAGCCTAAACCTCCACCGATGGCCTTTACCCCACCAAGGACCTGGGA
ACACTAGGTGGGCAGGGCCTGAGGGCATAAGACCCCCACACAAATTTCCCCACCTCTTGG
ACTTGGGGATGGAATCTGTGCTCCAACCCAGACCAGCTCTCTAGGGATATGTTTCAGGGA
CAGATAGAGAGGAATCTGTGGGAAGGGAGAGGAATGGAAGTATGAGTACCTACCTCTGTC
CAGTAATAGAGGTGCCCGGGTCCCTAAGGTACTGACTCCCTAATTCCCTCCAAAGCAAAC
CAAGGAGGGCTGTTACCCAAATAGCCTTCTGTATACCCACATCAGTGTGCCTCGCAACAG
TAAAATAAGGTGTTTGTTTTTGTAGGACCTATAGAAAATCAAGAAGCCTCCTAAGCTTTT
TGCTGGGGAGAAGGGCAGCAGAGGAGTTCCAGGATCCCTTAATCCCCAGGCGGTTGGCTT
CCTGGTTAGCCTTTCCCTCTGGACCTCATAGGCTCAATCCCCCTTCTCCTACCTCAGTTG
GTGGTACTGACTGTCCTCCATGGTGCTTCCCTTTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               513-826, + strand, RNAz p=0.90957

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               513-826, + strand, RNAz p=0.90957

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               597-691, - strand, RNAmicro p=0.975813

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               597-691, - strand, RNAmicro p=0.975813

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               3-360, gnl|bosTau2|chr5 (35041457-35041107)
               

               
               3-360, gnl|Hg17|chr12 (54513785-54514777)
               

               
               3-360, gnl|Mm7|chr10 (128303466-128303119)
               


               
               361-1054, gnl|bosTau2|chr5 (35040989-35040258)
               

               
               361-1054, gnl|Hg17|chr12 (54514902-54515908)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-360, gnl|bosTau2|chr5 (35041457-35041107)
               

               
               3-360, gnl|Hg17|chr12 (54513785-54514777)
               

               
               3-360, gnl|Mm7|chr10 (128303466-128303119)
               


               
               361-1054, gnl|bosTau2|chr5 (35040989-35040258)
               

               
               361-1054, gnl|Hg17|chr12 (54514902-54515908)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ese (0.126502)
               

               
               eje (0.0988338)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.126502)
               

               
               eje (0.0988338)

	3-360, gnl\|bosTau2\|chr5 (35041457-35041107)
	3-360, gnl\|Hg17\|chr12 (54513785-54514777)
	3-360, gnl\|Mm7\|chr10 (128303466-128303119)

	361-1054, gnl\|bosTau2\|chr5 (35040989-35040258)
	361-1054, gnl\|Hg17\|chr12 (54514902-54515908)