Non-Coding RNA Search

Ss1.1-rese23c_a2.5

Sequence:


               
               GGAAGGAGACCCTGGTGGAAGAAACCACAGCAGAGTCGAGTGACGACGAGGGGGGGGCAC
CTTCCCAGTCTCTCCTCTCAGGTTATGTGACCCCTGGACTGACTCCAGGCACCTCCCAGG
CTTCAAAGACCACTCCCAAACCAGCCCCCAGCCCCTCAGTTTCGTCTCCTCCGGCCACCA
AAGATGCGCTAGGCGGCAAGCGGGGTGCTGAGGCCCCAAGAGCAGCAGGCACCACGTCCC
CAAAGTCAGGCAGAGGAGAGGCTGGCGCCACACCGCAGAGGCCCCGGGAGGGGCCCGAGA
GCCCCCAGGCCTCCAGGCTGGCTCTGCAGCATGACATTGCCCGGCGGCTGCTGGGCGAAC
CCTGGCCCCTGAGCGAGGCGCACGTGCAGGCCTCCGTGGCCAAGGTGCTGACGGAGCTGC
TGGAGCAGGAGAGGAGGAAGGCTGCCGATGCTGCCAGGGAAGGCCGCCGCAAGGGCCGCA
AGCGGAAGCTGTCAGAGGACCAGACGGCCGCCAAGGCCCCCAAGAGCAAGAAGAAGAAGC
AGCTGGCGGCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAGGAGACCCTGGTGGAAGAAACCACAGCAGAGTCGAGTGACGACGAGGGGGGGGCAC
CTTCCCAGTCTCTCCTCTCAGGTTATGTGACCCCTGGACTGACTCCAGGCACCTCCCAGG
CTTCAAAGACCACTCCCAAACCAGCCCCCAGCCCCTCAGTTTCGTCTCCTCCGGCCACCA
AAGATGCGCTAGGCGGCAAGCGGGGTGCTGAGGCCCCAAGAGCAGCAGGCACCACGTCCC
CAAAGTCAGGCAGAGGAGAGGCTGGCGCCACACCGCAGAGGCCCCGGGAGGGGCCCGAGA
GCCCCCAGGCCTCCAGGCTGGCTCTGCAGCATGACATTGCCCGGCGGCTGCTGGGCGAAC
CCTGGCCCCTGAGCGAGGCGCACGTGCAGGCCTCCGTGGCCAAGGTGCTGACGGAGCTGC
TGGAGCAGGAGAGGAGGAAGGCTGCCGATGCTGCCAGGGAAGGCCGCCGCAAGGGCCGCA
AGCGGAAGCTGTCAGAGGACCAGACGGCCGCCAAGGCCCCCAAGAGCAAGAAGAAGAAGC
AGCTGGCGGCTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               91-184, - strand, RNAz p=0.816231

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               91-184, - strand, RNAz p=0.816231

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               66-261, gnl|bosTau2|chr7 (38978468-38978662)
               

               
               66-261, gnl|canFam2|chr4 (61907815-61907637)
               

               
               66-261, gnl|dasNov1|scaffold_27342 (4229-4009)
               

               
               66-261, gnl|hg17|chr5 (149753111-149753331)
               

               
               66-261, gnl|Hg17|chr5 (149753125-149753319)
               

               
               66-261, gnl|mm7|chr18 (61207668-61207463)
               

               
               66-261, gnl|Mm7|chr18 (61207652-61207463)
               

               
               66-261, gnl|monDom2|scaffold_6 (56716616-56716369)
               

               
               66-261, gnl|oryCun1|scaffold_198701 (47273-47483)
               

               
               66-261, gnl|panTro1|chr4 (156676826-156677046)
               

               
               66-261, gnl|rheMac2|chr6 (146868938-146869158)
               

               
               66-261, gnl|rn3|chr18 (56844201-56843992)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               66-261, gnl|bosTau2|chr7 (38978468-38978662)
               

               
               66-261, gnl|canFam2|chr4 (61907815-61907637)
               

               
               66-261, gnl|dasNov1|scaffold_27342 (4229-4009)
               

               
               66-261, gnl|hg17|chr5 (149753111-149753331)
               

               
               66-261, gnl|Hg17|chr5 (149753125-149753319)
               

               
               66-261, gnl|mm7|chr18 (61207668-61207463)
               

               
               66-261, gnl|Mm7|chr18 (61207652-61207463)
               

               
               66-261, gnl|monDom2|scaffold_6 (56716616-56716369)
               

               
               66-261, gnl|oryCun1|scaffold_198701 (47273-47483)
               

               
               66-261, gnl|panTro1|chr4 (156676826-156677046)
               

               
               66-261, gnl|rheMac2|chr6 (146868938-146869158)
               

               
               66-261, gnl|rn3|chr18 (56844201-56843992)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ese (0.126502)
               

               
               med (0.116252)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.126502)
               

               
               med (0.116252)

	66-261, gnl\|bosTau2\|chr7 (38978468-38978662)
	66-261, gnl\|canFam2\|chr4 (61907815-61907637)
	66-261, gnl\|dasNov1\|scaffold_27342 (4229-4009)
	66-261, gnl\|hg17\|chr5 (149753111-149753331)
	66-261, gnl\|Hg17\|chr5 (149753125-149753319)
	66-261, gnl\|mm7\|chr18 (61207668-61207463)
	66-261, gnl\|Mm7\|chr18 (61207652-61207463)
	66-261, gnl\|monDom2\|scaffold_6 (56716616-56716369)
	66-261, gnl\|oryCun1\|scaffold_198701 (47273-47483)
	66-261, gnl\|panTro1\|chr4 (156676826-156677046)
	66-261, gnl\|rheMac2\|chr6 (146868938-146869158)
	66-261, gnl\|rn3\|chr18 (56844201-56843992)