Non-Coding RNA Search

Ss1.1-rese23c_b22.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCT
GGGGATGGGAAGCCTTTATTGACCACGAGGCCGAGCGGCCTCCAGGGGGCGTGCGGCTGC
CGGGAGCGCGGGCGGCGGGGCCCCCGGGGGCCTAGGACTCCGTCTCGAACATCTTCTTGC
GGCCCTCCATGCCCGACTTCTCCTCGATGTTCTTCCTCCAGTCGCCCACGTCGCGCAGGT
CCCGCTCCTTCTCCGTGTCCTCCTTCTTGACCTGCTTCAGGTTGGCCCGCAGGTCCATGC
ACACTTTGTGCTTGGAGCCCAGCAGCGCCTTGAGCATGGCATCGGCCGACATCCGCACCC
TTCTCAGCGGGGGCCTCTTGAACTTGCCTCTCAGGTCGAACAGCTTCTGGTTCATGTCCT
CCAGCTCCTTGGTGCTTTTCTGGACCTTGATCTCCATGTCGTACTTCTCCTCCTCCGCCG
CGTCGATCTTGGCGTGCAGCTGTTTGCAGAGCTCCTGGACCTCCGACATGGAGCCGGGCA
GGTGCAGCGGGGGGCAGTGCTCAGACAGGTAGTTCTGCTTCTCCGACTCCCGGCGGCCCA
CCTCCTTCTCCAGCTCCGTGGCCGCGATCTGGAGCATGACGCTCTTCAGGTGCTGTCTGC
GGGCCGTGATGGCCCTGTGGCGCTTCTCCTCATCCCCCATCTTGAGCTCCTGGACTTAGA
GCCTCACGTCTGGGCAGCAGCACTGGGGCTGAGGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCT
GGGGATGGGAAGCCTTTATTGACCACGAGGCCGAGCGGCCTCCAGGGGGCGTGCGGCTGC
CGGGAGCGCGGGCGGCGGGGCCCCCGGGGGCCTAGGACTCCGTCTCGAACATCTTCTTGC
GGCCCTCCATGCCCGACTTCTCCTCGATGTTCTTCCTCCAGTCGCCCACGTCGCGCAGGT
CCCGCTCCTTCTCCGTGTCCTCCTTCTTGACCTGCTTCAGGTTGGCCCGCAGGTCCATGC
ACACTTTGTGCTTGGAGCCCAGCAGCGCCTTGAGCATGGCATCGGCCGACATCCGCACCC
TTCTCAGCGGGGGCCTCTTGAACTTGCCTCTCAGGTCGAACAGCTTCTGGTTCATGTCCT
CCAGCTCCTTGGTGCTTTTCTGGACCTTGATCTCCATGTCGTACTTCTCCTCCTCCGCCG
CGTCGATCTTGGCGTGCAGCTGTTTGCAGAGCTCCTGGACCTCCGACATGGAGCCGGGCA
GGTGCAGCGGGGGGCAGTGCTCAGACAGGTAGTTCTGCTTCTCCGACTCCCGGCGGCCCA
CCTCCTTCTCCAGCTCCGTGGCCGCGATCTGGAGCATGACGCTCTTCAGGTGCTGTCTGC
GGGCCGTGATGGCCCTGTGGCGCTTCTCCTCATCCCCCATCTTGAGCTCCTGGACTTAGA
GCCTCACGTCTGGGCAGCAGCACTGGGGCTGAGGTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|8394466|ref|NP_058881.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|8394466|ref|NP_058881.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               247-435, gnl|bosTau2|chr16 (47169446-47169634)
               

               
               247-435, gnl|Hg17|chr1 (198112141-198112329)
               

               
               247-435, gnl|Mm7|chr1 (135694998-135694811)
               


               
               514-664, gnl|bosTau2|chr29 (44058432-44058283)
               

               
               514-664, gnl|Hg17|chr11 (1818463-1818324)
               

               
               514-664, gnl|Mm7|chr7 (138870712-138870563)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               247-435, gnl|bosTau2|chr16 (47169446-47169634)
               

               
               247-435, gnl|Hg17|chr1 (198112141-198112329)
               

               
               247-435, gnl|Mm7|chr1 (135694998-135694811)
               


               
               514-664, gnl|bosTau2|chr29 (44058432-44058283)
               

               
               514-664, gnl|Hg17|chr11 (1818463-1818324)
               

               
               514-664, gnl|Mm7|chr7 (138870712-138870563)

Expressed library(ies): 17 entry(ies)

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Expressed library(ies): 17 entry(ies)

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               mas (10.7256)
               

               
               nms (6.84346)
               

               
               ldo (4.07411)
               

               
               ese (3.79507)
               

               
               ste (2.83937)
               

               
               nep (2.57495)
               

               
               ton (2.457)
               

               
               ssp (1.89728)
               

               
               sme (1.83262)
               

               
               nca (0.958117)
               

               
               eru (0.60024)
               

               
               jca (0.34188)
               

               
               col (0.195008)
               

               
               eye (0.170503)
               

               
               cag (0.151194)
               

               
               lin (0.145603)
               

               
               pty (0.142714)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (10.7256)
               

               
               nms (6.84346)
               

               
               ldo (4.07411)
               

               
               ese (3.79507)
               

               
               ste (2.83937)
               

               
               nep (2.57495)
               

               
               ton (2.457)
               

               
               ssp (1.89728)
               

               
               sme (1.83262)
               

               
               nca (0.958117)
               

               
               eru (0.60024)
               

               
               jca (0.34188)
               

               
               col (0.195008)
               

               
               eye (0.170503)
               

               
               cag (0.151194)
               

               
               lin (0.145603)
               

               
               pty (0.142714)

	247-435, gnl\|bosTau2\|chr16 (47169446-47169634)
	247-435, gnl\|Hg17\|chr1 (198112141-198112329)
	247-435, gnl\|Mm7\|chr1 (135694998-135694811)

	514-664, gnl\|bosTau2\|chr29 (44058432-44058283)
	514-664, gnl\|Hg17\|chr11 (1818463-1818324)
	514-664, gnl\|Mm7\|chr7 (138870712-138870563)

	mas (10.7256)
	nms (6.84346)
	ldo (4.07411)
	ese (3.79507)
	ste (2.83937)
	nep (2.57495)
	ton (2.457)
	ssp (1.89728)
	sme (1.83262)
	nca (0.958117)
	eru (0.60024)
	jca (0.34188)
	col (0.195008)
	eye (0.170503)
	cag (0.151194)
	lin (0.145603)
	pty (0.142714)