Non-Coding RNA Search

Ss1.1-rese24c_g21.5

Sequence:


               
               GCCATTCGTTGCTCTGGCGGCATCTTCTAAGCCAGCTTCCAAGCCAGCCGGCAAGCTCGG
GCCCTTGCTCGGTCCCGTGCATTCAGGTAATTTACGTCTTGGAAGCCACCACCGTGAAGG
TCCTGGCAGGGCTCAGAGGGTTAATCGGTTTGCAGTGTGTCTTGGTCTATTGCATGTCTG
GGATAACTCAGACCCCAAAGGCTTGGGGTTTCAGAAGGGACAGTGGAGAGCTTGCTCCTT
GCTGTGGGCACAGTGCCCCGCGGAGACGCTTGGCAGGAGGGTCGCGCCGTCCTGGTTTTC
ATCACATGGCTTTTCCTCCCCCTTCTTCTCCATTCCCTGAGGCGCCAACACTGAAACTCC
GAGGAACCTCCCAGGAGTCAGAACCAGCGCCAGTCCCTCGGTGTCCGCGGCAACCCAGGC
CCAAGCTTCAGTTTTCCACCTGAACTTGATGCCCACTGATCGCACCGCAGGGGAGCCTGG
CCTTCAGTTACCGACGGGGGTGAATGTGTGTGTATTACGTTGTCCAAGAGAGATTAGGGT
GATGACCGATGGTGGAGGGCGCAGAGCAAGAGCCAGCCATGCCTGCCCAGTGTGCCCCCT
TGGAGGGCACGGAGGGCGAGGGCAGGGACAGAGGGAAGAGCCCAGAGGGGAGAAGCCTTT
GGACGGAAAGTGGGCGGGCGAGGAGTCCGGGTGCGTCCAGGAGACCTGGCCAGGCTGCCC
ATCTGCCCCGCGGGGAGCAAGCCGGCCCCTCCTGGGAGTGAACTGCCTGGGGGCACTTGA
TCTTGAGGACTCCCCGTATCCCCCACTGGCGCCAGGGAGTCACCTGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCATTCGTTGCTCTGGCGGCATCTTCTAAGCCAGCTTCCAAGCCAGCCGGCAAGCTCGG
GCCCTTGCTCGGTCCCGTGCATTCAGGTAATTTACGTCTTGGAAGCCACCACCGTGAAGG
TCCTGGCAGGGCTCAGAGGGTTAATCGGTTTGCAGTGTGTCTTGGTCTATTGCATGTCTG
GGATAACTCAGACCCCAAAGGCTTGGGGTTTCAGAAGGGACAGTGGAGAGCTTGCTCCTT
GCTGTGGGCACAGTGCCCCGCGGAGACGCTTGGCAGGAGGGTCGCGCCGTCCTGGTTTTC
ATCACATGGCTTTTCCTCCCCCTTCTTCTCCATTCCCTGAGGCGCCAACACTGAAACTCC
GAGGAACCTCCCAGGAGTCAGAACCAGCGCCAGTCCCTCGGTGTCCGCGGCAACCCAGGC
CCAAGCTTCAGTTTTCCACCTGAACTTGATGCCCACTGATCGCACCGCAGGGGAGCCTGG
CCTTCAGTTACCGACGGGGGTGAATGTGTGTGTATTACGTTGTCCAAGAGAGATTAGGGT
GATGACCGATGGTGGAGGGCGCAGAGCAAGAGCCAGCCATGCCTGCCCAGTGTGCCCCCT
TGGAGGGCACGGAGGGCGAGGGCAGGGACAGAGGGAAGAGCCCAGAGGGGAGAAGCCTTT
GGACGGAAAGTGGGCGGGCGAGGAGTCCGGGTGCGTCCAGGAGACCTGGCCAGGCTGCCC
ATCTGCCCCGCGGGGAGCAAGCCGGCCCCTCCTGGGAGTGAACTGCCTGGGGGCACTTGA
TCTTGAGGACTCCCCGTATCCCCCACTGGCGCCAGGGAGTCACCTGGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               240-344, - strand, RNAz p=0.640303

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               240-344, - strand, RNAz p=0.640303

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               75-795, gnl|bosTau2|chr25 (4184697-4183975)
               

               
               75-795, gnl|Hg17|chr16 (4181129-4180350)
               

               
               75-795, gnl|Mm7|chr16 (4153648-4152921)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               75-795, gnl|bosTau2|chr25 (4184697-4183975)
               

               
               75-795, gnl|Hg17|chr16 (4181129-4180350)
               

               
               75-795, gnl|Mm7|chr16 (4153648-4152921)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ese (0.253004)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.253004)

	75-795, gnl\|bosTau2\|chr25 (4184697-4183975)
	75-795, gnl\|Hg17\|chr16 (4181129-4180350)
	75-795, gnl\|Mm7\|chr16 (4153648-4152921)