Ss1.1-rese24c_i13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGAAACCCAAAAATGGCTGCGAGCCCCTCTGTAGTCCCAGTGACTGCTGTAATGCCGGT CCTGTCATCGAGTGGCGATTTCTCAAATTTGCGAGAAATTAAAAAGCAGCTGCTACTTAT CGCGGGCCTTACCCGCGAGCGGGGCCTACTGCACAGTAGCAAATGGTCAGCGGAGTTGGC CTTCTCCCTTCCAGCGTTGCCTCTGTCCGAGCTGCAGCCGCCGCCGCCTATTACAGAGGA GGATGCCCAGGATATGGATGCTTACACTCTAGCCAAGGCCTACTTTGATGTTAAAGAATA TGATCGGGCAGCACATTTCCTACATGGCTGCAATAGCAAGAAAGCCTATTTCCTGTACAT GTATTCTAGATACCTGTCTGGGGAAAAGAAGAAGGATGATGAAACAGTTGACAGCCTAGG CCCCCTGGAGAAAGGTCAAGTGAAAAATGAGGCTCTTAGAGAATTGAGAGTGGAACTCAG CAAAAAACACCAGGCTCGGGAGCTTGATGGGTTTGGCCTTTATCTGTATGGTGTGGTGCT TCGAAAGCTGGACTTGGTGAAAGAGGCCATTGATGTGTTTGTGGAGGCTACTCATGTTTT GCCTTTGCACTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGAAACCCAAAAATGGCTGCGAGCCCCTCTGTAGTCCCAGTGACTGCTGTAATGCCGGT CCTGTCATCGAGTGGCGATTTCTCAAATTTGCGAGAAATTAAAAAGCAGCTGCTACTTAT CGCGGGCCTTACCCGCGAGCGGGGCCTACTGCACAGTAGCAAATGGTCAGCGGAGTTGGC CTTCTCCCTTCCAGCGTTGCCTCTGTCCGAGCTGCAGCCGCCGCCGCCTATTACAGAGGA GGATGCCCAGGATATGGATGCTTACACTCTAGCCAAGGCCTACTTTGATGTTAAAGAATA TGATCGGGCAGCACATTTCCTACATGGCTGCAATAGCAAGAAAGCCTATTTCCTGTACAT GTATTCTAGATACCTGTCTGGGGAAAAGAAGAAGGATGATGAAACAGTTGACAGCCTAGG CCCCCTGGAGAAAGGTCAAGTGAAAAATGAGGCTCTTAGAGAATTGAGAGTGGAACTCAG CAAAAAACACCAGGCTCGGGAGCTTGATGGGTTTGGCCTTTATCTGTATGGTGTGGTGCT TCGAAAGCTGGACTTGGTGAAAGAGGCCATTGATGTGTTTGTGGAGGCTACTCATGTTTT GCCTTTGCACTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 42-161, + strand, RNAz p=0.723575 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 42-161, + strand, RNAz p=0.723575 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BC010944, + |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 11-167, gnl|bosTau2|chr7 (34751559-34751394) | |
| 11-167, gnl|canFam2|chr11 (28868233-28868386) | |
| 11-167, gnl|danRer3|chr21 (26710515-26710631) | |
| 11-167, gnl|dasNov1|scaffold_130113 (2759-2912) | |
| 11-167, gnl|galGal2|chr13 (17110863-17110991) | |
| 11-167, gnl|hg17|chr5 (137576725-137576878) | |
| 11-167, gnl|Hg17|chr5 (137576903-137576738) | |
| 11-167, gnl|loxAfr1|scaffold_25944 (31021-31174) | |
| 11-167, gnl|mm7|chr18 (35027012-35027165) | |
| 11-167, gnl|Mm7|chr18 (35027190-35027025) | |
| 11-167, gnl|monDom2|scaffold_6 (71294278-71294131) | |
| 11-167, gnl|oryCun1|scaffold_213143 (14714-14867) | |
| 11-167, gnl|panTro1|chr4 (144178988-144179141) | |
| 11-167, gnl|rheMac2|chr6 (134627494-134627647) | |
| 11-167, gnl|rn3|chr18 (27154498-27154651) | |
| 11-167, gnl|tetNig1|chr7 (4291368-4291475) | |
| 11-167, gnl|xenTro1|scaffold_230 (1376374-1376234) | |
| 237-376, gnl|bosTau2|chr7 (34749462-34749323) | |
| 237-376, gnl|Hg17|chr5 (137570274-137570135) | |
| 237-376, gnl|Mm7|chr18 (35022506-35022367) | |
| 415-528, gnl|bosTau2|chr7 (34747380-34747266) | |
| 415-528, gnl|canFam2|chr11 (28862736-28862854) | |
| 415-528, gnl|danRer3|chr21 (26707876-26707994) | |
| 415-528, gnl|dasNov1|scaffold_11899 (712-590) | |
| 415-528, gnl|echTel1|scaffold_320408 (53411-53289) | |
| 415-528, gnl|fr1|chrUn (4694107-4693989) | |
| 415-528, gnl|galGal2|chr13 (17108245-17108374) | |
| 415-528, gnl|hg17|chr5 (137564925-137565047) | |
| 415-528, gnl|Hg17|chr5 (137565041-137564928) | |
| 415-528, gnl|loxAfr1|scaffold_111965 (515-393) | |
| 415-528, gnl|mm7|chr18 (35019484-35019606) | |
| 415-528, gnl|Mm7|chr18 (35019600-35019487) | |
| 415-528, gnl|monDom2|scaffold_6 (71308595-71308473) | |
| 415-528, gnl|oryCun1|scaffold_203987 (50232-50354) | |
| 415-528, gnl|panTro1|chr4 (144167139-144167261) | |
| 415-528, gnl|rheMac2|chr6 (134615591-134615713) | |
| 415-528, gnl|rn3|chr18 (27147971-27148091) | |
| 415-528, gnl|tetNig1|chr7 (4290325-4290446) | |
| 415-528, gnl|xenTro1|scaffold_230 (1380324-1380202) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 11-167, gnl|bosTau2|chr7 (34751559-34751394) | |
| 11-167, gnl|canFam2|chr11 (28868233-28868386) | |
| 11-167, gnl|danRer3|chr21 (26710515-26710631) | |
| 11-167, gnl|dasNov1|scaffold_130113 (2759-2912) | |
| 11-167, gnl|galGal2|chr13 (17110863-17110991) | |
| 11-167, gnl|hg17|chr5 (137576725-137576878) | |
| 11-167, gnl|Hg17|chr5 (137576903-137576738) | |
| 11-167, gnl|loxAfr1|scaffold_25944 (31021-31174) | |
| 11-167, gnl|mm7|chr18 (35027012-35027165) | |
| 11-167, gnl|Mm7|chr18 (35027190-35027025) | |
| 11-167, gnl|monDom2|scaffold_6 (71294278-71294131) | |
| 11-167, gnl|oryCun1|scaffold_213143 (14714-14867) | |
| 11-167, gnl|panTro1|chr4 (144178988-144179141) | |
| 11-167, gnl|rheMac2|chr6 (134627494-134627647) | |
| 11-167, gnl|rn3|chr18 (27154498-27154651) | |
| 11-167, gnl|tetNig1|chr7 (4291368-4291475) | |
| 11-167, gnl|xenTro1|scaffold_230 (1376374-1376234) | |
| 237-376, gnl|bosTau2|chr7 (34749462-34749323) | |
| 237-376, gnl|Hg17|chr5 (137570274-137570135) | |
| 237-376, gnl|Mm7|chr18 (35022506-35022367) | |
| 415-528, gnl|bosTau2|chr7 (34747380-34747266) | |
| 415-528, gnl|canFam2|chr11 (28862736-28862854) | |
| 415-528, gnl|danRer3|chr21 (26707876-26707994) | |
| 415-528, gnl|dasNov1|scaffold_11899 (712-590) | |
| 415-528, gnl|echTel1|scaffold_320408 (53411-53289) | |
| 415-528, gnl|fr1|chrUn (4694107-4693989) | |
| 415-528, gnl|galGal2|chr13 (17108245-17108374) | |
| 415-528, gnl|hg17|chr5 (137564925-137565047) | |
| 415-528, gnl|Hg17|chr5 (137565041-137564928) | |
| 415-528, gnl|loxAfr1|scaffold_111965 (515-393) | |
| 415-528, gnl|mm7|chr18 (35019484-35019606) | |
| 415-528, gnl|Mm7|chr18 (35019600-35019487) | |
| 415-528, gnl|monDom2|scaffold_6 (71308595-71308473) | |
| 415-528, gnl|oryCun1|scaffold_203987 (50232-50354) | |
| 415-528, gnl|panTro1|chr4 (144167139-144167261) | |
| 415-528, gnl|rheMac2|chr6 (134615591-134615713) | |
| 415-528, gnl|rn3|chr18 (27147971-27148091) | |
| 415-528, gnl|tetNig1|chr7 (4290325-4290446) | |
| 415-528, gnl|xenTro1|scaffold_230 (1380324-1380202) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ese (0.126502) |