Ss1.1-rese25c_b7.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATCAACTTGGAGATTTAGAGTTCAGGTGAGCGAAGCAGGTGTCCATAGGCCCCATGTTGG TGGAATTCATGGTCGAAGTAATGATGGAGCTTATTCTCTTGTCCTGGCTGGAGGATTTGC AGATGAAGTAGACCGAGGTGATGAATTCACATACACTGGAAGTGGTGGTAAAAATCTTGC TGGTAATAAAAGGATTGGTGCACCATCGGCTGATCAAACATTAACAAACATGAACAGGGC ATTGGCCCTAAACTGTGATGCTCCATTGGATGATAAAATTGGAGCAGAGTCTCGGAATTG GAGAGCTGGTAAGCCAGTCAGAGTGATACGCAGTTTTAAAGGGAGGAAGATCAGCAAATA TGCTCCTGAAGAAGGCAACAGATATGATGGCATTTATAAGGTGGTGAAATACTGGCCGGA GATTTCATCAAGCCATGGATTCTTGGTTTGGCGCTATCTTTTAAGGAGAGATGATGTTGA ACCCGCTCCTTGGACCTCGGAAGGAATAGAACGGTCAAGGAGACTATGTCTGCGTTTACA GTATCCAGTAGGTTACCCTTCAGAAAAGGAAGGGAAGAAGACTAAAGGACAGTCAAAGAA AGCCAGTGGAGCCTCAAAAAGAGCACCTTCTACAGATGATGATTGTCCAAGTGCCTCCAA AGTGTTAAAAGCATCGGATTCAGCAGAAGCAGTTGAGGCTTTCCAACTAACCCCGCAACA GCAACATCTAATCAGAGAAGATCATCAAAACCAGAAGCTGTGGGATGAAGTTCTTGCATC GCTTGTGGAAGGACCAAATTTTCTGAAAAAACTGGAACAATCTTTCATGTGTGTCTGCTG CCAGGAGCTAGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATCAACTTGGAGATTTAGAGTTCAGGTGAGCGAAGCAGGTGTCCATAGGCCCCATGTTGG TGGAATTCATGGTCGAAGTAATGATGGAGCTTATTCTCTTGTCCTGGCTGGAGGATTTGC AGATGAAGTAGACCGAGGTGATGAATTCACATACACTGGAAGTGGTGGTAAAAATCTTGC TGGTAATAAAAGGATTGGTGCACCATCGGCTGATCAAACATTAACAAACATGAACAGGGC ATTGGCCCTAAACTGTGATGCTCCATTGGATGATAAAATTGGAGCAGAGTCTCGGAATTG GAGAGCTGGTAAGCCAGTCAGAGTGATACGCAGTTTTAAAGGGAGGAAGATCAGCAAATA TGCTCCTGAAGAAGGCAACAGATATGATGGCATTTATAAGGTGGTGAAATACTGGCCGGA GATTTCATCAAGCCATGGATTCTTGGTTTGGCGCTATCTTTTAAGGAGAGATGATGTTGA ACCCGCTCCTTGGACCTCGGAAGGAATAGAACGGTCAAGGAGACTATGTCTGCGTTTACA GTATCCAGTAGGTTACCCTTCAGAAAAGGAAGGGAAGAAGACTAAAGGACAGTCAAAGAA AGCCAGTGGAGCCTCAAAAAGAGCACCTTCTACAGATGATGATTGTCCAAGTGCCTCCAA AGTGTTAAAAGCATCGGATTCAGCAGAAGCAGTTGAGGCTTTCCAACTAACCCCGCAACA GCAACATCTAATCAGAGAAGATCATCAAAACCAGAAGCTGTGGGATGAAGTTCTTGCATC GCTTGTGGAAGGACCAAATTTTCTGAAAAAACTGGAACAATCTTTCATGTGTGTCTGCTG CCAGGAGCTAGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 236-354, + strand, RNAz p=0.917205 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 236-354, + strand, RNAz p=0.917205 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_152306, + |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 24-131, gnl|bosTau2|chr8 (19109817-19109710) | |
| 24-131, gnl|canFam2|chr11 (30474683-30474833) | |
| 24-131, gnl|danRer3|chrNA (52109320-52109168) | |
| 24-131, gnl|fr1|chrUn (77746717-77746833) | |
| 24-131, gnl|galGal2|chrZ (12117828-12118022) | |
| 24-131, gnl|hg17|chr9 (6476806-6476960) | |
| 24-131, gnl|Hg17|chr9 (6476819-6476926) | |
| 24-131, gnl|loxAfr1|scaffold_2769 (29346-29195) | |
| 24-131, gnl|mm7|chr19 (29779663-29779822) | |
| 24-131, gnl|Mm7|chr19 (29779681-29779788) | |
| 24-131, gnl|monDom2|scaffold_5 (110135511-110135340) | |
| 24-131, gnl|oryCun1|scaffold_101290 (4107-4261) | |
| 24-131, gnl|panTro1|chr11 (6406336-6406490) | |
| 24-131, gnl|rheMac2|chr15 (70663941-70663787) | |
| 24-131, gnl|rn3|chr1 (233990326-233990483) | |
| 24-131, gnl|tetNig1|chr4 (2218543-2218677) | |
| 24-131, gnl|xenTro1|scaffold_52 (1777072-1776920) | |
| 236-403, gnl|bosTau2|chr8 (19104351-19104184) | |
| 236-403, gnl|Hg17|chr9 (6487196-6487363) | |
| 236-403, gnl|Mm7|chr19 (29786088-29786255) | |
| 638-796, gnl|bosTau2|chr8 (19101174-19101016) | |
| 638-796, gnl|Hg17|chr9 (6490551-6490709) | |
| 638-796, gnl|Mm7|chr19 (29789029-29789187) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 24-131, gnl|bosTau2|chr8 (19109817-19109710) | |
| 24-131, gnl|canFam2|chr11 (30474683-30474833) | |
| 24-131, gnl|danRer3|chrNA (52109320-52109168) | |
| 24-131, gnl|fr1|chrUn (77746717-77746833) | |
| 24-131, gnl|galGal2|chrZ (12117828-12118022) | |
| 24-131, gnl|hg17|chr9 (6476806-6476960) | |
| 24-131, gnl|Hg17|chr9 (6476819-6476926) | |
| 24-131, gnl|loxAfr1|scaffold_2769 (29346-29195) | |
| 24-131, gnl|mm7|chr19 (29779663-29779822) | |
| 24-131, gnl|Mm7|chr19 (29779681-29779788) | |
| 24-131, gnl|monDom2|scaffold_5 (110135511-110135340) | |
| 24-131, gnl|oryCun1|scaffold_101290 (4107-4261) | |
| 24-131, gnl|panTro1|chr11 (6406336-6406490) | |
| 24-131, gnl|rheMac2|chr15 (70663941-70663787) | |
| 24-131, gnl|rn3|chr1 (233990326-233990483) | |
| 24-131, gnl|tetNig1|chr4 (2218543-2218677) | |
| 24-131, gnl|xenTro1|scaffold_52 (1777072-1776920) | |
| 236-403, gnl|bosTau2|chr8 (19104351-19104184) | |
| 236-403, gnl|Hg17|chr9 (6487196-6487363) | |
| 236-403, gnl|Mm7|chr19 (29786088-29786255) | |
| 638-796, gnl|bosTau2|chr8 (19101174-19101016) | |
| 638-796, gnl|Hg17|chr9 (6490551-6490709) | |
| 638-796, gnl|Mm7|chr19 (29789029-29789187) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| elu (0.385356) | |
| col (0.195008) | |
| fhi (0.169578) | |
| ese (0.126502) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| col (0.195008) | |
| fhi (0.169578) | |
| ese (0.126502) |