Non-Coding RNA Search

Ss1.1-rese25c_h12.5

Sequence:


               
               AAATGGGGACATGACTTCTGGACAGAGGACATGGGCCACGCCCCTGTGCCTCCCCACCCC
TGCCCCTCCAGACGGCTTTATTACCTCATACGCAGCTCATCTTAAACCAATAGAATCGCT
CGGTGGACGAGAGTGTCTGACTCAGATATCTACCTCGGAGGGAGTTTCTGCTACTTTAGG
GAATTGTTGACTGGGCTTTGGGGTTGAACTTTTTTTTTTTTTTTTTAAGGGAAAAAAAAA
TAACCCCGGGACCATCGGGATTTTTTTTTTTTTTAAAATACAGGGGTTTTTTGGGGGGGG
GGGGGGGTTTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATGGGGACATGACTTCTGGACAGAGGACATGGGCCACGCCCCTGTGCCTCCCCACCCC
TGCCCCTCCAGACGGCTTTATTACCTCATACGCAGCTCATCTTAAACCAATAGAATCGCT
CGGTGGACGAGAGTGTCTGACTCAGATATCTACCTCGGAGGGAGTTTCTGCTACTTTAGG
GAATTGTTGACTGGGCTTTGGGGTTGAACTTTTTTTTTTTTTTTTTAAGGGAAAAAAAAA
TAACCCCGGGACCATCGGGATTTTTTTTTTTTTTAAAATACAGGGGTTTTTTGGGGGGGG
GGGGGGGTTTTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               151-268, + strand, RNAz p=0.925214

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               151-268, + strand, RNAz p=0.925214

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_002586, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_002586, +

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-309, gnl|bosTau2|chr23 (23685311-23685617)
               

               
               1-309, gnl|canFam2|chr12 (4581590-4580715)
               

               
               1-309, gnl|dasNov1|scaffold_211125 (819-4)
               

               
               1-309, gnl|echTel1|scaffold_201277 (3252-4080)
               

               
               1-309, gnl|hg17|chr3 (144379556-144380434)
               

               
               1-309, gnl|Hg17|chr6 (32261674-32261364)
               

               
               1-309, gnl|loxAfr1|scaffold_32936 (6092-6951)
               

               
               1-309, gnl|mm7|chr17 (32680762-32681585)
               

               
               1-309, gnl|Mm7|chr17 (32680830-32681125)
               

               
               1-309, gnl|monDom2|scaffold_42 (17143928-17144802)
               

               
               1-309, gnl|oryCun1|scaffold_192689 (3313-4147)
               

               
               1-309, gnl|panTro1|chr5 (32630314-32629439)
               

               
               1-309, gnl|rheMac2|chr4 (31807930-31807063)
               

               
               1-309, gnl|rn3|chr20 (4255384-4254548)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-309, gnl|bosTau2|chr23 (23685311-23685617)
               

               
               1-309, gnl|canFam2|chr12 (4581590-4580715)
               

               
               1-309, gnl|dasNov1|scaffold_211125 (819-4)
               

               
               1-309, gnl|echTel1|scaffold_201277 (3252-4080)
               

               
               1-309, gnl|hg17|chr3 (144379556-144380434)
               

               
               1-309, gnl|Hg17|chr6 (32261674-32261364)
               

               
               1-309, gnl|loxAfr1|scaffold_32936 (6092-6951)
               

               
               1-309, gnl|mm7|chr17 (32680762-32681585)
               

               
               1-309, gnl|Mm7|chr17 (32680830-32681125)
               

               
               1-309, gnl|monDom2|scaffold_42 (17143928-17144802)
               

               
               1-309, gnl|oryCun1|scaffold_192689 (3313-4147)
               

               
               1-309, gnl|panTro1|chr5 (32630314-32629439)
               

               
               1-309, gnl|rheMac2|chr4 (31807930-31807063)
               

               
               1-309, gnl|rn3|chr20 (4255384-4254548)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               pla (0.133672)
               

               
               ese (0.126502)
               

               
               eep (0.122564)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               eep (0.122564)

	1-309, gnl\|bosTau2\|chr23 (23685311-23685617)
	1-309, gnl\|canFam2\|chr12 (4581590-4580715)
	1-309, gnl\|dasNov1\|scaffold_211125 (819-4)
	1-309, gnl\|echTel1\|scaffold_201277 (3252-4080)
	1-309, gnl\|hg17\|chr3 (144379556-144380434)
	1-309, gnl\|Hg17\|chr6 (32261674-32261364)
	1-309, gnl\|loxAfr1\|scaffold_32936 (6092-6951)
	1-309, gnl\|mm7\|chr17 (32680762-32681585)
	1-309, gnl\|Mm7\|chr17 (32680830-32681125)
	1-309, gnl\|monDom2\|scaffold_42 (17143928-17144802)
	1-309, gnl\|oryCun1\|scaffold_192689 (3313-4147)
	1-309, gnl\|panTro1\|chr5 (32630314-32629439)
	1-309, gnl\|rheMac2\|chr4 (31807930-31807063)
	1-309, gnl\|rn3\|chr20 (4255384-4254548)