Non-Coding RNA Search

Ss1.1-rese25c_j6.5

Sequence:


               
               TTCCCGCTGCTCTTCATGTCCCTCGTGCGCTCCGTGGTCGGCGTCGTCAACCAGCCCATC
GACGTCACCGTCACCCTCAAGCTGGGCGGCTACGAGCCGCTCTTCACCATGAGCGCCCAG
CAGCCGTCCATCGTGCCCTTCACGCAGCAGGCCTACGAGGAGCTGTCCAGGCAGTTTGAC
CCCCACCCGCTGGCCATGCAGTTCATCAGCCAGTACAGCCCCGAGGACATCGTCACGGCG
CAGATCGAGGGCAGCTCCGGGGCGCTGTGGCGCATCAGCCCCCCGAGCCGGGCCCAGATG
AAGCGGGAGCTGTACAACGGCACCGCCGACATCACCCTGCGCTTCACCTGGAACTTCCAG
AGGGACCTGGCCAAGGGCGGCACCGTGGAGTACACCAACGAGAAGCACACCCTGGACCTG
GCGCCCAACAGCACTGAGCGGCGGCAGCTGGCCAGCCTGCTGGAGGGCACCTCGGACCAG
TCAGTGGTCATTCCTCGCCTCTTCCCCAAGTACATCCGCGCCCCCAACGGACCTGAAGCC
AACCCCGTGAAGCAACTGCAACCCAATGAGGAGGCCGACTACCTCGGGGTGCGTATCCAG
CTGCGCAGGGAGCGTGTGGGCTCAGGGGCAGCTGGCTTCCTCGAGTGGTGGGTCATCGAG
CTGCAGGACTGCCAGGCCCGCTGCAACCTGCTGCCCATGGTCATCTTCAGCGACAAGGTC
AGCCCGCCCAGCCTGGGCTTCCTGGCCGGCTACGGCATCATGGGGCTCTACGTGTCCATC
GTGCTGGTCATCGGCAAGTTCGTGCGCGGCTTCTTCAGCGAGATCTCGCACTCCATCATG
TTTGAGGAGCTGCCGTGCGTGGACCGCATCCTCAAGCTCTGCCAGGACATCTTCCTGGTG
CGGGAGACGCGGGAGCTGGAGCTGGAGGAGGAGCTGTACGCCAAGCTCATCTTCCTGTAC
CGCTCGCCCGAGACCATGATCCAGTGGACGCGGGAGAAGGAGTAGGGCCGCGGCCCGAGG
CTGCTGCGGGAGGAAGGACGCCGCGGGGACACCCCGCCCGGCGCGGGTCTGCTCGCCTCC
CCACACGTACTGTAGCGTTTTCTAATTAAATGTTTTATTTATACACAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCCGCTGCTCTTCATGTCCCTCGTGCGCTCCGTGGTCGGCGTCGTCAACCAGCCCATC
GACGTCACCGTCACCCTCAAGCTGGGCGGCTACGAGCCGCTCTTCACCATGAGCGCCCAG
CAGCCGTCCATCGTGCCCTTCACGCAGCAGGCCTACGAGGAGCTGTCCAGGCAGTTTGAC
CCCCACCCGCTGGCCATGCAGTTCATCAGCCAGTACAGCCCCGAGGACATCGTCACGGCG
CAGATCGAGGGCAGCTCCGGGGCGCTGTGGCGCATCAGCCCCCCGAGCCGGGCCCAGATG
AAGCGGGAGCTGTACAACGGCACCGCCGACATCACCCTGCGCTTCACCTGGAACTTCCAG
AGGGACCTGGCCAAGGGCGGCACCGTGGAGTACACCAACGAGAAGCACACCCTGGACCTG
GCGCCCAACAGCACTGAGCGGCGGCAGCTGGCCAGCCTGCTGGAGGGCACCTCGGACCAG
TCAGTGGTCATTCCTCGCCTCTTCCCCAAGTACATCCGCGCCCCCAACGGACCTGAAGCC
AACCCCGTGAAGCAACTGCAACCCAATGAGGAGGCCGACTACCTCGGGGTGCGTATCCAG
CTGCGCAGGGAGCGTGTGGGCTCAGGGGCAGCTGGCTTCCTCGAGTGGTGGGTCATCGAG
CTGCAGGACTGCCAGGCCCGCTGCAACCTGCTGCCCATGGTCATCTTCAGCGACAAGGTC
AGCCCGCCCAGCCTGGGCTTCCTGGCCGGCTACGGCATCATGGGGCTCTACGTGTCCATC
GTGCTGGTCATCGGCAAGTTCGTGCGCGGCTTCTTCAGCGAGATCTCGCACTCCATCATG
TTTGAGGAGCTGCCGTGCGTGGACCGCATCCTCAAGCTCTGCCAGGACATCTTCCTGGTG
CGGGAGACGCGGGAGCTGGAGCTGGAGGAGGAGCTGTACGCCAAGCTCATCTTCCTGTAC
CGCTCGCCCGAGACCATGATCCAGTGGACGCGGGAGAAGGAGTAGGGCCGCGGCCCGAGG
CTGCTGCGGGAGGAAGGACGCCGCGGGGACACCCCGCCCGGCGCGGGTCTGCTCGCCTCC
CCACACGTACTGTAGCGTTTTCTAATTAAATGTTTTATTTATACACAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q7TQL5_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q7TQL5_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               215-334, + strand, RNAz p=0.515018

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               215-334, + strand, RNAz p=0.515018

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               177-363, gnl|bosTau2|chr18 (12643032-12643219)
               

               
               177-363, gnl|Hg17|chr16 (87310654-87310467)
               

               
               177-363, gnl|Mm7|chr8 (121125248-121125061)
               


               
               755-990, gnl|bosTau2|chr13 (38085747-38085980)
               

               
               755-990, gnl|Mm7|chr8 (121124237-121124002)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               177-363, gnl|bosTau2|chr18 (12643032-12643219)
               

               
               177-363, gnl|Hg17|chr16 (87310654-87310467)
               

               
               177-363, gnl|Mm7|chr8 (121125248-121125061)
               


               
               755-990, gnl|bosTau2|chr13 (38085747-38085980)
               

               
               755-990, gnl|Mm7|chr8 (121124237-121124002)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               amn (0.417711)
               

               
               fbs (0.175346)
               

               
               cki (0.165235)
               

               
               lnt (0.142308)
               

               
               ese (0.126502)
               

               
               clu (0.119646)
               

               
               med (0.116252)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               fbs (0.175346)
               

               
               cki (0.165235)
               

               
               lnt (0.142308)
               

               
               ese (0.126502)
               

               
               clu (0.119646)
               

               
               med (0.116252)

	177-363, gnl\|bosTau2\|chr18 (12643032-12643219)
	177-363, gnl\|Hg17\|chr16 (87310654-87310467)
	177-363, gnl\|Mm7\|chr8 (121125248-121125061)

	755-990, gnl\|bosTau2\|chr13 (38085747-38085980)
	755-990, gnl\|Mm7\|chr8 (121124237-121124002)

	amn (0.417711)
	fbs (0.175346)
	cki (0.165235)
	lnt (0.142308)
	ese (0.126502)
	clu (0.119646)
	med (0.116252)