Non-Coding RNA Search

Ss1.1-rese25c_m11.5

Sequence:


               
               CATGGTGCAGGCCCAGATCCACCTGCCCGTGGTGCAGTCGGTGGCGTCCCCCGCAGCCGC
GCCCCCCACGCTGCCTCCCTACTTCATGAAAGGCTCCATCATCCAGCTGGCCAACGGGGA
GCTGAAGAAGGTGGAAGACCTAAAGACGGAAGACTTCATCCAGAGCGCGGAGATCAGCAA
CGACCTCAAGATCGACTCCAGCACCGTGGAGCGGATTGAGAACAGCCACAGCCCAGGCGT
TGCGGTGATACAGTTTGCCGTCGGGGATCACCGAGCACAGGTCAGCGTGGAAGTTTGGGT
AGAGTATCCTTTTTTTGTGTTTGGACAGGGCTGGTCATCCTGTTGCCCAGAGAGAACCAG
CCAGCTCTTTGATTTGCCGTGTTCCAAACTCTCCGTTGGGGATGTCTGTATCTCACTCAC
CCTCAAAAACCTGAAGAACGGCTCTGTTAAAAAGGGCCAGCCCGTGGATCCTGCCAGCGT
CCTGCTGAAACACTCAAAGACTGACGGCCTCGCGGGCAGTAGACACAGGTATGCCGAGCA
GGAGAACGGGATCAATCAGGGAGGCGCCCAGATGCTCTCCGAGAACGGCGAACTGAAGTT
TCCAGGAAGGATAGGATTGCCTGCCGCCCCCTTGCTCACCAAAATCGAACCCAGCAAGCC
CGCGGCCACGAGGAAGAGGAGGTGGTCGGCGCCGGAGTCCCGCAAACTGGAGAAGTCGGA
AGACGAGCCACCTTTGACTCTTCCTAAGCCTTCTCTCATTTCTCAGGAGGTTAAGATTTG
CATCGAAGGCCGCTCTAATGTAGGCAAGTAGAGGCCGCGTGGGGAAAGGAAATCGGCCCT
CCTTTATCATTTGTATCCAGATTACTGTACTGTAGGCTTAATAACACAGTATTTACATGT
TATCCTCTTCCTTTAGGTTTCTGTTATAACCTTGTCATTAGAGTTACAGCTGGTGTTGGG
CAGGAGACGGTGCATATGCTTTTCCCACGCGTGTCTCTTGGCGGGTGGGCAGCTGGGGGC
CAGGGCAAGTGCAGCCCAGGCCCCGGGCGCGCATCCTGGTGGAAATGAAGGTGGCCCCAC
GGCACCTGCCTTTTCTAGAGGCACAAATGCACCCGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATGGTGCAGGCCCAGATCCACCTGCCCGTGGTGCAGTCGGTGGCGTCCCCCGCAGCCGC
GCCCCCCACGCTGCCTCCCTACTTCATGAAAGGCTCCATCATCCAGCTGGCCAACGGGGA
GCTGAAGAAGGTGGAAGACCTAAAGACGGAAGACTTCATCCAGAGCGCGGAGATCAGCAA
CGACCTCAAGATCGACTCCAGCACCGTGGAGCGGATTGAGAACAGCCACAGCCCAGGCGT
TGCGGTGATACAGTTTGCCGTCGGGGATCACCGAGCACAGGTCAGCGTGGAAGTTTGGGT
AGAGTATCCTTTTTTTGTGTTTGGACAGGGCTGGTCATCCTGTTGCCCAGAGAGAACCAG
CCAGCTCTTTGATTTGCCGTGTTCCAAACTCTCCGTTGGGGATGTCTGTATCTCACTCAC
CCTCAAAAACCTGAAGAACGGCTCTGTTAAAAAGGGCCAGCCCGTGGATCCTGCCAGCGT
CCTGCTGAAACACTCAAAGACTGACGGCCTCGCGGGCAGTAGACACAGGTATGCCGAGCA
GGAGAACGGGATCAATCAGGGAGGCGCCCAGATGCTCTCCGAGAACGGCGAACTGAAGTT
TCCAGGAAGGATAGGATTGCCTGCCGCCCCCTTGCTCACCAAAATCGAACCCAGCAAGCC
CGCGGCCACGAGGAAGAGGAGGTGGTCGGCGCCGGAGTCCCGCAAACTGGAGAAGTCGGA
AGACGAGCCACCTTTGACTCTTCCTAAGCCTTCTCTCATTTCTCAGGAGGTTAAGATTTG
CATCGAAGGCCGCTCTAATGTAGGCAAGTAGAGGCCGCGTGGGGAAAGGAAATCGGCCCT
CCTTTATCATTTGTATCCAGATTACTGTACTGTAGGCTTAATAACACAGTATTTACATGT
TATCCTCTTCCTTTAGGTTTCTGTTATAACCTTGTCATTAGAGTTACAGCTGGTGTTGGG
CAGGAGACGGTGCATATGCTTTTCCCACGCGTGTCTCTTGGCGGGTGGGCAGCTGGGGGC
CAGGGCAAGTGCAGCCCAGGCCCCGGGCGCGCATCCTGGTGGAAATGAAGGTGGCCCCAC
GGCACCTGCCTTTTCTAGAGGCACAAATGCACCCGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|39654356|pdb|1OA8|D

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|39654356|pdb|1OA8|D

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               8-435, gnl|bosTau2|chr18 (32352172-32351749)
               

               
               8-435, gnl|Hg17|chr16 (70442477-70442901)
               

               
               8-435, gnl|Mm7|chr8 (108332434-108332010)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-435, gnl|bosTau2|chr18 (32352172-32351749)
               

               
               8-435, gnl|Hg17|chr16 (70442477-70442901)
               

               
               8-435, gnl|Mm7|chr8 (108332434-108332010)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ese (0.126502)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.126502)

	8-435, gnl\|bosTau2\|chr18 (32352172-32351749)
	8-435, gnl\|Hg17\|chr16 (70442477-70442901)
	8-435, gnl\|Mm7\|chr8 (108332434-108332010)