Ss1.1-rese26c_h21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGTCCTCCTCGGCCTGGTACATGAGCTCCTTGACCCGGCGCTCGTGTTTCCGCACCCCCT TGAGGGCCTCGGCGTGCTTCTTCTGCTCCGCGTCAAGCTCAGCCTCCAGCTCCCGCACCT TGGCCTCCAGCTTCTGCACCTGCTTCTTCCCGCCACGGAGGGCAGCTTGTTCTGCCTCCT CAAGCCGGGCCTGTAGCTCCCGCACCGTCTGTTCTAGTGTCTTCTTCATCCCTTCCAGGT GTGTACTGGTGTCTTGCTCCTTTTTCAGCTCCTCCGCCATCATGGCTGCGTCGGTGATGG CCTTTTTGGCCTTCTCCTCGGCTTCCCGTCTTTCCTGGGCAGCCTCCTCCACCTCGCCGC TCAGCTGGGCCAAATCCACCTCTAGTTTCTTCTTCTGGTTCAAGAGGCCTGTGTTCTGGG AATGCAGAAGGTTGAGGCGCTCGGTGGCCTCTAGCAGCTCCTGTTCCGCCAGCCGGCGGC TGCGCTCGCCCTGCTCCAGGGCAGCCCGCAGCTCCTCCAGCTCCGCAGCCAGCAGGGCGG CCCGCCGCTCCAGGGCCTGTGCCTGCTCGCGGAGCTCAGCCGCCAGCCGCTGCTCCTCGT CCCGCCCGGCCTGCTCCTCCTTGAGTTGGGCCTGCAGCAGCCGCGTGGCTGCCTGTGCCT CCGTGGCCTGGCGGGTGGCATGGCCCAGCTGCAGCTCCAGGTCATTGAGGTCACCCTCCA TCTTCTTCTTGAGCCGCAGGGCCTCATTGCGCGCTCGAGTCTCTGCATCCAGGGAGGCCT GCAGGGACTCCACTGCCCGCTGGTGGTTGCGCCTCAGGTTAGTGCACTCCTCATCTTTCT CCGCCAGCTTCCGGTCCACTTCAGCCTTGACCTGGGAGAGCTCCAGCTGGATCCGCAGAG TCTTGGTCTCCTCCAGCTCCAGGGCCCCCTCGGCCTCCTCCAGTGCGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGTCCTCCTCGGCCTGGTACATGAGCTCCTTGACCCGGCGCTCGTGTTTCCGCACCCCCT TGAGGGCCTCGGCGTGCTTCTTCTGCTCCGCGTCAAGCTCAGCCTCCAGCTCCCGCACCT TGGCCTCCAGCTTCTGCACCTGCTTCTTCCCGCCACGGAGGGCAGCTTGTTCTGCCTCCT CAAGCCGGGCCTGTAGCTCCCGCACCGTCTGTTCTAGTGTCTTCTTCATCCCTTCCAGGT GTGTACTGGTGTCTTGCTCCTTTTTCAGCTCCTCCGCCATCATGGCTGCGTCGGTGATGG CCTTTTTGGCCTTCTCCTCGGCTTCCCGTCTTTCCTGGGCAGCCTCCTCCACCTCGCCGC TCAGCTGGGCCAAATCCACCTCTAGTTTCTTCTTCTGGTTCAAGAGGCCTGTGTTCTGGG AATGCAGAAGGTTGAGGCGCTCGGTGGCCTCTAGCAGCTCCTGTTCCGCCAGCCGGCGGC TGCGCTCGCCCTGCTCCAGGGCAGCCCGCAGCTCCTCCAGCTCCGCAGCCAGCAGGGCGG CCCGCCGCTCCAGGGCCTGTGCCTGCTCGCGGAGCTCAGCCGCCAGCCGCTGCTCCTCGT CCCGCCCGGCCTGCTCCTCCTTGAGTTGGGCCTGCAGCAGCCGCGTGGCTGCCTGTGCCT CCGTGGCCTGGCGGGTGGCATGGCCCAGCTGCAGCTCCAGGTCATTGAGGTCACCCTCCA TCTTCTTCTTGAGCCGCAGGGCCTCATTGCGCGCTCGAGTCTCTGCATCCAGGGAGGCCT GCAGGGACTCCACTGCCCGCTGGTGGTTGCGCCTCAGGTTAGTGCACTCCTCATCTTTCT CCGCCAGCTTCCGGTCCACTTCAGCCTTGACCTGGGAGAGCTCCAGCTGGATCCGCAGAG TCTTGGTCTCCTCCAGCTCCAGGGCCCCCTCGGCCTCCTCCAGTGCGG |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 615-820, - strand, RNAz p=0.888192 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 615-820, - strand, RNAz p=0.888192 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 116-289, gnl|bosTau2|chr13 (46547680-46547854) | |
| 116-289, gnl|canFam2|chr24 (27011211-27011400) | |
| 116-289, gnl|danRer3|chr10 (9774022-9774200) | |
| 116-289, gnl|dasNov1|scaffold_199 (92431-92243) | |
| 116-289, gnl|echTel1|scaffold_309010 (195092-195281) | |
| 116-289, gnl|fr1|chrUn (4063639-4063448) | |
| 116-289, gnl|galGal2|chr20 (2454310-2454113) | |
| 116-289, gnl|hg17|chr20 (33052450-33052639) | |
| 116-289, gnl|Hg17|chr20 (33052625-33052452) | |
| 116-289, gnl|loxAfr1|scaffold_18804 (26948-27137) | |
| 116-289, gnl|mm7|chr2 (155373704-155373891) | |
| 116-289, gnl|Mm7|chr2 (155373879-155373706) | |
| 116-289, gnl|monDom2|scaffold_6 (11963672-11963488) | |
| 116-289, gnl|oryCun1|scaffold_147635 (1568-1379) | |
| 116-289, gnl|panTro1|chr21 (35060583-35060772) | |
| 116-289, gnl|rheMac2|chr10 (29558646-29558457) | |
| 116-289, gnl|rn3|chr3 (146043762-146043951) | |
| 116-289, gnl|tetNig1|chr11 (9170383-9170192) | |
| 116-289, gnl|xenTro1|scaffold_35 (3158277-3158088) | |
| 416-820, gnl|bosTau2|chr13 (46548144-46548548) | |
| 416-820, gnl|Hg17|chr20 (33052153-33051751) | |
| 416-820, gnl|Mm7|chr2 (155373402-155373001) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 116-289, gnl|bosTau2|chr13 (46547680-46547854) | |
| 116-289, gnl|canFam2|chr24 (27011211-27011400) | |
| 116-289, gnl|danRer3|chr10 (9774022-9774200) | |
| 116-289, gnl|dasNov1|scaffold_199 (92431-92243) | |
| 116-289, gnl|echTel1|scaffold_309010 (195092-195281) | |
| 116-289, gnl|fr1|chrUn (4063639-4063448) | |
| 116-289, gnl|galGal2|chr20 (2454310-2454113) | |
| 116-289, gnl|hg17|chr20 (33052450-33052639) | |
| 116-289, gnl|Hg17|chr20 (33052625-33052452) | |
| 116-289, gnl|loxAfr1|scaffold_18804 (26948-27137) | |
| 116-289, gnl|mm7|chr2 (155373704-155373891) | |
| 116-289, gnl|Mm7|chr2 (155373879-155373706) | |
| 116-289, gnl|monDom2|scaffold_6 (11963672-11963488) | |
| 116-289, gnl|oryCun1|scaffold_147635 (1568-1379) | |
| 116-289, gnl|panTro1|chr21 (35060583-35060772) | |
| 116-289, gnl|rheMac2|chr10 (29558646-29558457) | |
| 116-289, gnl|rn3|chr3 (146043762-146043951) | |
| 116-289, gnl|tetNig1|chr11 (9170383-9170192) | |
| 116-289, gnl|xenTro1|scaffold_35 (3158277-3158088) | |
| 416-820, gnl|bosTau2|chr13 (46548144-46548548) | |
| 416-820, gnl|Hg17|chr20 (33052153-33051751) | |
| 416-820, gnl|Mm7|chr2 (155373402-155373001) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ese (0.253004) | |
| eru (0.120048) |