Non-Coding RNA Search

Ss1.1-rese26c_l7.5

Sequence:


               
               TGCGGTCGCTTACGCGTCGCGCTTCCTCGTCTGCTCCTCGTGTTCAGGGGAGTCGCTCTC
TTTTTTCCTCGGCAGAGAAGAGGCGATGGCGGCGCTGGCATCTCTCGGCGCCCTGGCGCT
ACTCCTGCTGTCCGGCCTCTCCTGCTGCTCAGCAGAGGCCTGTGTGGAGCCCCAGATCAC
GCCCTCGTACTATACCACGTCGGACGCCGTCATCTCCACAGAGACCGTGTTCATCGTGGA
ACTCTCCGTGACGTGCAAGAACAGGGTCCAGAACATGGCTCTTTATGCTGACGTCAGTGG
TAAACAGTTTCCTGTCACCCGGGGCCAAGACGTGGGGCGTTATCAGGTGTCCTGGAGCCT
GGACCACAAGAGCGCACATGCGGGCACCTACGAGGTCAGGTTCTTCGATGAGGAGTCCTA
CAGCCTCCTGAGGAAGGCTCAGAGAAATAACGAGGACGTTTCCGTCATCCCGCCTCTGTT
CACAGTCAGCGTGGACCATCGGGGCACTTGGAACGGGCCCTGGGTCTCCACAGAGGTCCT
GGCCGCAGCCATTGGCCTGGTGATCTACTACCTGGCCTTCAGTGCCAAGAGCCACATCCA
GGCCTGAGGGTGCTGCCCCCGGATCCCCGGCTTCTTTCAATAAAGAGTTACTGGCTAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCGGTCGCTTACGCGTCGCGCTTCCTCGTCTGCTCCTCGTGTTCAGGGGAGTCGCTCTC
TTTTTTCCTCGGCAGAGAAGAGGCGATGGCGGCGCTGGCATCTCTCGGCGCCCTGGCGCT
ACTCCTGCTGTCCGGCCTCTCCTGCTGCTCAGCAGAGGCCTGTGTGGAGCCCCAGATCAC
GCCCTCGTACTATACCACGTCGGACGCCGTCATCTCCACAGAGACCGTGTTCATCGTGGA
ACTCTCCGTGACGTGCAAGAACAGGGTCCAGAACATGGCTCTTTATGCTGACGTCAGTGG
TAAACAGTTTCCTGTCACCCGGGGCCAAGACGTGGGGCGTTATCAGGTGTCCTGGAGCCT
GGACCACAAGAGCGCACATGCGGGCACCTACGAGGTCAGGTTCTTCGATGAGGAGTCCTA
CAGCCTCCTGAGGAAGGCTCAGAGAAATAACGAGGACGTTTCCGTCATCCCGCCTCTGTT
CACAGTCAGCGTGGACCATCGGGGCACTTGGAACGGGCCCTGGGTCTCCACAGAGGTCCT
GGCCGCAGCCATTGGCCTGGTGATCTACTACCTGGCCTTCAGTGCCAAGAGCCACATCCA
GGCCTGAGGGTGCTGCCCCCGGATCCCCGGCTTCTTTCAATAAAGAGTTACTGGCTAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               SSRD_RAT

Coded protein: 1 entry(ies)

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Protein identifier


               
               SSRD_RAT

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               2-169, gnl|bosTau2|chrX (13489899-13489731)
               

               
               2-169, gnl|Hg17|chrX (152580905-152581074)
               

               
               2-169, gnl|Mm7|chrX (69173804-69173973)
               


               
               502-657, gnl|bosTau2|chrX (13486243-13486087)
               

               
               502-657, gnl|Hg17|chrX (152584630-152584783)
               

               
               502-657, gnl|Mm7|chrX (69177302-69177459)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-169, gnl|bosTau2|chrX (13489899-13489731)
               

               
               2-169, gnl|Hg17|chrX (152580905-152581074)
               

               
               2-169, gnl|Mm7|chrX (69173804-69173973)
               


               
               502-657, gnl|bosTau2|chrX (13486243-13486087)
               

               
               502-657, gnl|Hg17|chrX (152584630-152584783)
               

               
               502-657, gnl|Mm7|chrX (69177302-69177459)

Expressed library(ies): 47 entry(ies)

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Expressed library(ies): 47 entry(ies)

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               eje (2.17434)
               

               
               duo (2.07361)
               

               
               nca (1.64249)
               

               
               cov (1.45368)
               

               
               ese (1.39152)
               

               
               nje (1.32736)
               

               
               amn (1.25313)
               

               
               fce (1.08637)
               

               
               mas (1.05152)
               

               
               pty (0.999001)
               

               
               eru (0.960384)
               

               
               nep (0.919625)
               

               
               eli (0.910885)
               

               
               fty (0.879198)
               

               
               eep (0.857948)
               

               
               csp (0.805932)
               

               
               ecc (0.805246)
               

               
               ute (0.796707)
               

               
               col (0.780031)
               

               
               cag (0.755972)
               

               
               cly (0.723851)
               

               
               med (0.697512)
               

               
               jej (0.593531)
               

               
               cga (0.558191)
               

               
               mcp (0.511945)
               

               
               nco (0.485201)
               

               
               ebs (0.473205)
               

               
               ece (0.45861)
               

               
               lnt (0.426925)
               

               
               fli (0.405762)
               

               
               elu (0.385356)
               

               
               nlu (0.383362)
               

               
               pgl (0.35545)
               

               
               ton (0.351)
               

               
               fbs (0.350693)
               

               
               jca (0.34188)
               

               
               nbm (0.297974)
               

               
               nms (0.213858)
               

               
               ill (0.175593)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)

Expressed library(ies): 47 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eje (2.17434)
               

               
               duo (2.07361)
               

               
               nca (1.64249)
               

               
               cov (1.45368)
               

               
               ese (1.39152)
               

               
               nje (1.32736)
               

               
               amn (1.25313)
               

               
               fce (1.08637)
               

               
               mas (1.05152)
               

               
               pty (0.999001)
               

               
               eru (0.960384)
               

               
               nep (0.919625)
               

               
               eli (0.910885)
               

               
               fty (0.879198)
               

               
               eep (0.857948)
               

               
               csp (0.805932)
               

               
               ecc (0.805246)
               

               
               ute (0.796707)
               

               
               col (0.780031)
               

               
               cag (0.755972)
               

               
               cly (0.723851)
               

               
               med (0.697512)
               

               
               jej (0.593531)
               

               
               cga (0.558191)
               

               
               mcp (0.511945)
               

               
               nco (0.485201)
               

               
               ebs (0.473205)
               

               
               ece (0.45861)
               

               
               lnt (0.426925)
               

               
               fli (0.405762)
               

               
               elu (0.385356)
               

               
               nlu (0.383362)
               

               
               pgl (0.35545)
               

               
               ton (0.351)
               

               
               fbs (0.350693)
               

               
               jca (0.34188)
               

               
               nbm (0.297974)
               

               
               nms (0.213858)
               

               
               ill (0.175593)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)

	2-169, gnl\|bosTau2\|chrX (13489899-13489731)
	2-169, gnl\|Hg17\|chrX (152580905-152581074)
	2-169, gnl\|Mm7\|chrX (69173804-69173973)

	502-657, gnl\|bosTau2\|chrX (13486243-13486087)
	502-657, gnl\|Hg17\|chrX (152584630-152584783)
	502-657, gnl\|Mm7\|chrX (69177302-69177459)

	eje (2.17434)
	duo (2.07361)
	nca (1.64249)
	cov (1.45368)
	ese (1.39152)
	nje (1.32736)
	amn (1.25313)
	fce (1.08637)
	mas (1.05152)
	pty (0.999001)
	eru (0.960384)
	nep (0.919625)
	eli (0.910885)
	fty (0.879198)
	eep (0.857948)
	csp (0.805932)
	ecc (0.805246)
	ute (0.796707)
	col (0.780031)
	cag (0.755972)
	cly (0.723851)
	med (0.697512)
	jej (0.593531)
	cga (0.558191)
	mcp (0.511945)
	nco (0.485201)
	ebs (0.473205)
	ece (0.45861)
	lnt (0.426925)
	fli (0.405762)
	elu (0.385356)
	nlu (0.383362)
	pgl (0.35545)
	ton (0.351)
	fbs (0.350693)
	jca (0.34188)
	nbm (0.297974)
	nms (0.213858)
	ill (0.175593)
	fhi (0.169578)
	cje (0.165235)
	cli (0.152812)
	hyp (0.142837)
	che (0.136314)
	ssp (0.13552)
	nmm (0.132802)
	ova (0.129132)