Non-Coding RNA Search

Ss1.1-rese26c_p19.5

Sequence:


               
               TGAGGGGAAAAGTGTTAAATTTTTACTTGATTTTTAACCCCCTTAGTCTGAGGGGAATGT
CTTTGTGTGTTAAAAATGTTTCTCCTGCGATGTGTTTATTCTAGTTCTTCTCCTGATCTA
TATTTTTCTCCCTGATGAATTTTCAGAAATATTAATCCATCAGTTCAATTCCTCTGTACC
TCTGTTGAGCCTTAATCTTGGCAGAAGGCTCATCAATACAATATAATTATGAAGCATACT
ATATTTAAGAGAAAAAAATCTAGATGTTTGTGTGAAACAATAAAATATTTGCCTGCAGTT
TTATTTAAAAACTGCAAGAATATTATGCTTCTCTGCTCCTTAGTAAAGTTAAGTTAGAAG
TGAGGTGGAGATGTGGCTCACTGGAATAATCAGAGATCTCTCCCAGATTTGGCTTCATCT
CTCTTTAGTGCTTCTACCCATCAACTCTGTGCCAAATCCTTCTCCACGGGAACTCAGATC
ACTTTTTATTCCTTGGTTCTTGTGATTTCAGTGAAGATGGTTGCAGTGCAAGAGTTCCAA
ATCCTGAGGAAGAAGTCTTAACGGGTGTTGATGAAGCTTCACATCTGTGAAAGAGAAAAT
AGAGTATGTGGAATACATTTGGCTGTTAGTGGGATGCATATCAAATTCCTTAAAGACAGC
TTGGCCTAAGGAGTTAATCAGTATAATAAGTGCAGTTGATTTTAAGGCATTAAAGGATTA
CATAGTTATTTAGAATGTTTCTAATAACTGAGACCCTTCTAGCACTTTTCTTTTGGAGTC
TTTTAATTTGTGCAATATTTTCAGGCATATAGACTACTGTTCATGGTATTTATATAGATA
TTAGGGAACTTTATTAAGTATTTTAACAAGTAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAGGGGAAAAGTGTTAAATTTTTACTTGATTTTTAACCCCCTTAGTCTGAGGGGAATGT
CTTTGTGTGTTAAAAATGTTTCTCCTGCGATGTGTTTATTCTAGTTCTTCTCCTGATCTA
TATTTTTCTCCCTGATGAATTTTCAGAAATATTAATCCATCAGTTCAATTCCTCTGTACC
TCTGTTGAGCCTTAATCTTGGCAGAAGGCTCATCAATACAATATAATTATGAAGCATACT
ATATTTAAGAGAAAAAAATCTAGATGTTTGTGTGAAACAATAAAATATTTGCCTGCAGTT
TTATTTAAAAACTGCAAGAATATTATGCTTCTCTGCTCCTTAGTAAAGTTAAGTTAGAAG
TGAGGTGGAGATGTGGCTCACTGGAATAATCAGAGATCTCTCCCAGATTTGGCTTCATCT
CTCTTTAGTGCTTCTACCCATCAACTCTGTGCCAAATCCTTCTCCACGGGAACTCAGATC
ACTTTTTATTCCTTGGTTCTTGTGATTTCAGTGAAGATGGTTGCAGTGCAAGAGTTCCAA
ATCCTGAGGAAGAAGTCTTAACGGGTGTTGATGAAGCTTCACATCTGTGAAAGAGAAAAT
AGAGTATGTGGAATACATTTGGCTGTTAGTGGGATGCATATCAAATTCCTTAAAGACAGC
TTGGCCTAAGGAGTTAATCAGTATAATAAGTGCAGTTGATTTTAAGGCATTAAAGGATTA
CATAGTTATTTAGAATGTTTCTAATAACTGAGACCCTTCTAGCACTTTTCTTTTGGAGTC
TTTTAATTTGTGCAATATTTTCAGGCATATAGACTACTGTTCATGGTATTTATATAGATA
TTAGGGAACTTTATTAAGTATTTTAACAAGTAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               239-376, - strand, RNAz p=0.987363

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               239-376, - strand, RNAz p=0.987363

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               17-876, gnl|bosTau2|chr28 (29860755-29861617)
               

               
               17-876, gnl|Hg17|chr10 (86266349-86267234)
               

               
               17-876, gnl|Mm7|chr14 (34304586-34303453)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-876, gnl|bosTau2|chr28 (29860755-29861617)
               

               
               17-876, gnl|Hg17|chr10 (86266349-86267234)
               

               
               17-876, gnl|Mm7|chr14 (34304586-34303453)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               ese (0.253004)
               

               
               hlv (0.139256)
               

               
               tra (0.123092)
               

               
               clu (0.119646)
               

               
               ldo (0.0970026)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.253004)
               

               
               hlv (0.139256)
               

               
               tra (0.123092)
               

               
               clu (0.119646)
               

               
               ldo (0.0970026)

	17-876, gnl\|bosTau2\|chr28 (29860755-29861617)
	17-876, gnl\|Hg17\|chr10 (86266349-86267234)
	17-876, gnl\|Mm7\|chr14 (34304586-34303453)

	ese (0.253004)
	hlv (0.139256)
	tra (0.123092)
	clu (0.119646)
	ldo (0.0970026)