Non-Coding RNA Search

Ss1.1-rese27c_a6.5

Sequence:


               
               TATACGCCTTCCTTTCGACCTTCAATAGGCAGGGGGACTCGGCCCCCTCGGTCCAAGGCA
GAAGTGATATTGATCAGCTGGAGATCCCCCGGCTCCCAGAGCCCCCCGAGGGCTGTGAGG
AAAAGGCTGGCAGGTGTCGAGGGCAGCACCTCCTCCACGTCATGGCTGCGCACCAGGAAC
TCAGCCTGGTATGGGAGCAGGGGGCCTTCTGGGTCTGCAATCAACAGCACCAGCCTCTGC
CGGGTGGTGTCAAAACTGTCCCGGTTGTAGGCTGTGACCTCAATGACCTGGTGTCCGCGA
TCCTCTGGGGTGGCAGTGCCATAGAGGAAGCCAGGGTGGTGGGGGCTGCGCTGGGTGTAG
CGGAGCCACCGGGGCAGGTCTGGGTGTCCCTGGAGGTGGGCGTGGTAGGTGACAGGGACA
GCAACGTGCTCAGGAAGCTGCAGGAAAGCATCATGGTCCAGGGTGTATACCAACACGCGG
CCCACGAGTGGGTGCAGGGTGGTCTGCTGGATCTCGGTGCCCCCCAGCCCTGCCAGGAGA
CCCACGAGGAGAGAAATCCAGATCAGCGTTGCTGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATACGCCTTCCTTTCGACCTTCAATAGGCAGGGGGACTCGGCCCCCTCGGTCCAAGGCA
GAAGTGATATTGATCAGCTGGAGATCCCCCGGCTCCCAGAGCCCCCCGAGGGCTGTGAGG
AAAAGGCTGGCAGGTGTCGAGGGCAGCACCTCCTCCACGTCATGGCTGCGCACCAGGAAC
TCAGCCTGGTATGGGAGCAGGGGGCCTTCTGGGTCTGCAATCAACAGCACCAGCCTCTGC
CGGGTGGTGTCAAAACTGTCCCGGTTGTAGGCTGTGACCTCAATGACCTGGTGTCCGCGA
TCCTCTGGGGTGGCAGTGCCATAGAGGAAGCCAGGGTGGTGGGGGCTGCGCTGGGTGTAG
CGGAGCCACCGGGGCAGGTCTGGGTGTCCCTGGAGGTGGGCGTGGTAGGTGACAGGGACA
GCAACGTGCTCAGGAAGCTGCAGGAAAGCATCATGGTCCAGGGTGTATACCAACACGCGG
CCCACGAGTGGGTGCAGGGTGGTCTGCTGGATCTCGGTGCCCCCCAGCCCTGCCAGGAGA
CCCACGAGGAGAGAAATCCAGATCAGCGTTGCTGCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q58DK3_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q58DK3_BOVIN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               271-418, + strand, RNAz p=0.933936

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               271-418, + strand, RNAz p=0.933936

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               7-207, gnl|bosTau2|chr19 (29204494-29204694)
               

               
               7-207, gnl|Hg17|chr17 (45600932-45600732)
               

               
               7-207, gnl|Mm7|chr11 (95080280-95080480)
               


               
               271-418, gnl|bosTau2|chr19 (29205263-29205410)
               

               
               271-418, gnl|Hg17|chr17 (45600104-45599957)
               

               
               271-418, gnl|Mm7|chr11 (95081245-95081392)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-207, gnl|bosTau2|chr19 (29204494-29204694)
               

               
               7-207, gnl|Hg17|chr17 (45600932-45600732)
               

               
               7-207, gnl|Mm7|chr11 (95080280-95080480)
               


               
               271-418, gnl|bosTau2|chr19 (29205263-29205410)
               

               
               271-418, gnl|Hg17|chr17 (45600104-45599957)
               

               
               271-418, gnl|Mm7|chr11 (95081245-95081392)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               mas (0.210305)
               

               
               pty (0.142714)
               

               
               ese (0.126502)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)
               

               
               pty (0.142714)
               

               
               ese (0.126502)

	7-207, gnl\|bosTau2\|chr19 (29204494-29204694)
	7-207, gnl\|Hg17\|chr17 (45600932-45600732)
	7-207, gnl\|Mm7\|chr11 (95080280-95080480)

	271-418, gnl\|bosTau2\|chr19 (29205263-29205410)
	271-418, gnl\|Hg17\|chr17 (45600104-45599957)
	271-418, gnl\|Mm7\|chr11 (95081245-95081392)