Ss1.1-rese28c_a7.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTTGCCTCCCCTCCAGTTCGGGATGTGGGCATGAATTCTCCAGCTCTGGTCTTCCCCAG CTCTTCTTCTGCTCCTCCTGGCTCAGAGACCACAACCTTCAATAGGACAAATGAGCTGGG TTTGGATGCTTCTCCAGTGAAGAAGAACCCTCACCCTCCCAAGCTGGAAGGTGATGCTAC TGACGGCTGCTTTGCCAATAAGCATGGCCGCCATGTCATTGGACACATTGATGACTACAG TGCCCTAAGACAGCAGATTGAGGAGAGCAGACTGCTGGTCAAGAAGATAGCATCTCTCAT GAGATCAACCTGCAACTTTCCTGGCCTTGAAGCTCCAGGCCCAGAGGAGATGGGCAGCAA AGGTGTCCATGAGCTCCTGAGCAGCACCAACACTCTGCACCAGCGGCTGGAGGAGTCGAC CTCCCTCCTCACCATGTTCTGGCGAGCAGCCTTGCCAAGCTCCCAAGGCCCTGCACTGGC TGGCAAAGTGGGAGAGTCCGTGAAAAGGGAGCTTCTGGAACTGAAAACCAAACTATCCAA ACAGGAGAGTCTACTTCAAAGCACAACCGAGCGTCTAAAGACTGCCAACCAGCAGAAGGA GAGCATGGAGCAGTTCATCTTCAGCCAGTTGACCAGGACTCATGATGTTTTGAAGAAGGC AAGGACTAACTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTTGCCTCCCCTCCAGTTCGGGATGTGGGCATGAATTCTCCAGCTCTGGTCTTCCCCAG CTCTTCTTCTGCTCCTCCTGGCTCAGAGACCACAACCTTCAATAGGACAAATGAGCTGGG TTTGGATGCTTCTCCAGTGAAGAAGAACCCTCACCCTCCCAAGCTGGAAGGTGATGCTAC TGACGGCTGCTTTGCCAATAAGCATGGCCGCCATGTCATTGGACACATTGATGACTACAG TGCCCTAAGACAGCAGATTGAGGAGAGCAGACTGCTGGTCAAGAAGATAGCATCTCTCAT GAGATCAACCTGCAACTTTCCTGGCCTTGAAGCTCCAGGCCCAGAGGAGATGGGCAGCAA AGGTGTCCATGAGCTCCTGAGCAGCACCAACACTCTGCACCAGCGGCTGGAGGAGTCGAC CTCCCTCCTCACCATGTTCTGGCGAGCAGCCTTGCCAAGCTCCCAAGGCCCTGCACTGGC TGGCAAAGTGGGAGAGTCCGTGAAAAGGGAGCTTCTGGAACTGAAAACCAAACTATCCAA ACAGGAGAGTCTACTTCAAAGCACAACCGAGCGTCTAAAGACTGCCAACCAGCAGAAGGA GAGCATGGAGCAGTTCATCTTCAGCCAGTTGACCAGGACTCATGATGTTTTGAAGAAGGC AAGGACTAACTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 192-347, - strand, RNAz p=0.768758 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 192-347, - strand, RNAz p=0.768758 |
| Aligned organism(s): 57 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
| 2-111, gnl|bosTau2|chr3 (17946882-17946773) | |
| 2-111, gnl|canFam2|chr17 (60427104-60426968) | |
| 2-111, gnl|canFam2|chr17 (60426968-60427254) | |
| 2-111, gnl|echTel1|scaffold_323307 (193308-193175) | |
| 2-111, gnl|echTel1|scaffold_323307 (193175-193451) | |
| 2-111, gnl|hg17|chr1 (142346645-142346781) | |
| 2-111, gnl|Hg17|chr1 (145841811-145841920) | |
| 2-111, gnl|hg17|chr1_random (567072-567359) | |
| 2-111, gnl|loxAfr1|scaffold_31208 (11977-12110) | |
| 2-111, gnl|loxAfr1|scaffold_31208 (12110-11830) | |
| 2-111, gnl|mm7|chr3 (97567159-97567298) | |
| 2-111, gnl|mm7|chr3 (97567298-97567032) | |
| 2-111, gnl|Mm7|chr3 (97567284-97567175) | |
| 2-111, gnl|monDom2|scaffold_44 (927098-926960) | |
| 2-111, gnl|monDom2|scaffold_44 (926960-927244) | |
| 2-111, gnl|oryCun1|scaffold_175563 (41879-42015) | |
| 2-111, gnl|oryCun1|scaffold_175563 (42015-41731) | |
| 2-111, gnl|panTro1|chr1 (113106039-113105903) | |
| 2-111, gnl|panTro1|chr1 (113105903-113106190) | |
| 2-111, gnl|rheMac2|chr1 (123341071-123340935) | |
| 2-111, gnl|rheMac2|chr1 (123340935-123341222) | |
| 2-111, gnl|rn3|chr2 (192502375-192502514) | |
| 2-111, gnl|rn3|chr2 (192502514-192502248) | |
| 2-111, gnl|xenTro1|scaffold_19293 (3810-3659) | |
| 113-347, gnl|bosTau2|chr3 (17946211-17945983) | |
| 113-347, gnl|Hg17|chr1 (145842490-145842718) | |
| 113-347, gnl|Mm7|chr3 (97566410-97566182) | |
| 490-629, gnl|bosTau2|chr3 (17943669-17943530) | |
| 490-629, gnl|canFam2|chr17 (60431423-60431244) | |
| 490-629, gnl|canFam2|chr17 (60431244-60431423) | |
| 490-629, gnl|danRer3|chr20 (43359366-43359218) | |
| 490-629, gnl|dasNov1|scaffold_109821 (1575-1397) | |
| 490-629, gnl|dasNov1|scaffold_109821 (1397-1575) | |
| 490-629, gnl|fr1|chrUn (238106924-238107075) | |
| 490-629, gnl|fr1|chrUn (238107075-238106924) | |
| 490-629, gnl|hg17|chr1 (142343557-142343736) | |
| 490-629, gnl|Hg17|chr1 (145844868-145845007) | |
| 490-629, gnl|hg17|chr1_random (570117-570296) | |
| 490-629, gnl|loxAfr1|scaffold_31208 (8636-8815) | |
| 490-629, gnl|loxAfr1|scaffold_31208 (8815-8636) | |
| 490-629, gnl|mm7|chr3 (97563882-97564059) | |
| 490-629, gnl|mm7|chr3 (97564059-97563882) | |
| 490-629, gnl|Mm7|chr3 (97564026-97563887) | |
| 490-629, gnl|monDom2|scaffold_44 (938698-938520) | |
| 490-629, gnl|monDom2|scaffold_44 (938520-938698) | |
| 490-629, gnl|oryCun1|scaffold_175563 (38547-38725) | |
| 490-629, gnl|oryCun1|scaffold_175563 (38725-38547) | |
| 490-629, gnl|panTro1|chr1 (127969477-127969656) | |
| 490-629, gnl|panTro1|chr1_random (15926069-15926248) | |
| 490-629, gnl|rheMac2|chr1 (125799159-125798980) | |
| 490-629, gnl|rheMac2|chr1 (125798980-125799159) | |
| 490-629, gnl|rn3|chr2 (192499384-192499561) | |
| 490-629, gnl|rn3|chr2 (192499561-192499384) | |
| 490-629, gnl|tetNig1|chr15 (4932092-4931960) | |
| 490-629, gnl|tetNig1|chr15 (4931960-4932092) | |
| 490-629, gnl|xenTro1|scaffold_608 (775535-775352) | |
| 490-629, gnl|xenTro1|scaffold_608 (775352-775535) |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-111, gnl|bosTau2|chr3 (17946882-17946773) | |
| 2-111, gnl|canFam2|chr17 (60427104-60426968) | |
| 2-111, gnl|canFam2|chr17 (60426968-60427254) | |
| 2-111, gnl|echTel1|scaffold_323307 (193308-193175) | |
| 2-111, gnl|echTel1|scaffold_323307 (193175-193451) | |
| 2-111, gnl|hg17|chr1 (142346645-142346781) | |
| 2-111, gnl|Hg17|chr1 (145841811-145841920) | |
| 2-111, gnl|hg17|chr1_random (567072-567359) | |
| 2-111, gnl|loxAfr1|scaffold_31208 (11977-12110) | |
| 2-111, gnl|loxAfr1|scaffold_31208 (12110-11830) | |
| 2-111, gnl|mm7|chr3 (97567159-97567298) | |
| 2-111, gnl|mm7|chr3 (97567298-97567032) | |
| 2-111, gnl|Mm7|chr3 (97567284-97567175) | |
| 2-111, gnl|monDom2|scaffold_44 (927098-926960) | |
| 2-111, gnl|monDom2|scaffold_44 (926960-927244) | |
| 2-111, gnl|oryCun1|scaffold_175563 (41879-42015) | |
| 2-111, gnl|oryCun1|scaffold_175563 (42015-41731) | |
| 2-111, gnl|panTro1|chr1 (113106039-113105903) | |
| 2-111, gnl|panTro1|chr1 (113105903-113106190) | |
| 2-111, gnl|rheMac2|chr1 (123341071-123340935) | |
| 2-111, gnl|rheMac2|chr1 (123340935-123341222) | |
| 2-111, gnl|rn3|chr2 (192502375-192502514) | |
| 2-111, gnl|rn3|chr2 (192502514-192502248) | |
| 2-111, gnl|xenTro1|scaffold_19293 (3810-3659) | |
| 113-347, gnl|bosTau2|chr3 (17946211-17945983) | |
| 113-347, gnl|Hg17|chr1 (145842490-145842718) | |
| 113-347, gnl|Mm7|chr3 (97566410-97566182) | |
| 490-629, gnl|bosTau2|chr3 (17943669-17943530) | |
| 490-629, gnl|canFam2|chr17 (60431423-60431244) | |
| 490-629, gnl|canFam2|chr17 (60431244-60431423) | |
| 490-629, gnl|danRer3|chr20 (43359366-43359218) | |
| 490-629, gnl|dasNov1|scaffold_109821 (1575-1397) | |
| 490-629, gnl|dasNov1|scaffold_109821 (1397-1575) | |
| 490-629, gnl|fr1|chrUn (238106924-238107075) | |
| 490-629, gnl|fr1|chrUn (238107075-238106924) | |
| 490-629, gnl|hg17|chr1 (142343557-142343736) | |
| 490-629, gnl|Hg17|chr1 (145844868-145845007) | |
| 490-629, gnl|hg17|chr1_random (570117-570296) | |
| 490-629, gnl|loxAfr1|scaffold_31208 (8636-8815) | |
| 490-629, gnl|loxAfr1|scaffold_31208 (8815-8636) | |
| 490-629, gnl|mm7|chr3 (97563882-97564059) | |
| 490-629, gnl|mm7|chr3 (97564059-97563882) | |
| 490-629, gnl|Mm7|chr3 (97564026-97563887) | |
| 490-629, gnl|monDom2|scaffold_44 (938698-938520) | |
| 490-629, gnl|monDom2|scaffold_44 (938520-938698) | |
| 490-629, gnl|oryCun1|scaffold_175563 (38547-38725) | |
| 490-629, gnl|oryCun1|scaffold_175563 (38725-38547) | |
| 490-629, gnl|panTro1|chr1 (127969477-127969656) | |
| 490-629, gnl|panTro1|chr1_random (15926069-15926248) | |
| 490-629, gnl|rheMac2|chr1 (125799159-125798980) | |
| 490-629, gnl|rheMac2|chr1 (125798980-125799159) | |
| 490-629, gnl|rn3|chr2 (192499384-192499561) | |
| 490-629, gnl|rn3|chr2 (192499561-192499384) | |
| 490-629, gnl|tetNig1|chr15 (4932092-4931960) | |
| 490-629, gnl|tetNig1|chr15 (4931960-4932092) | |
| 490-629, gnl|xenTro1|scaffold_608 (775535-775352) | |
| 490-629, gnl|xenTro1|scaffold_608 (775352-775535) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| mas (0.42061) | |
| lun (0.150489) | |
| ese (0.126502) | |
| ldo (0.0970026) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (0.42061) | |
| lun (0.150489) | |
| ese (0.126502) | |
| ldo (0.0970026) |