Non-Coding RNA Search

Ss1.1-rese28c_g9.5

Sequence:


               
               TCTCGCGGCGGGACCGCCTCGGTCCGTTCGCCCAGAGAGACCGGGAGCTGGTCTAGTGGG
GAGCGGGCGGCCGCGCGCCCCCTCTCGTGCTTCCCCGAAGCTGCGCAGGAGCTGGCACAA
ACATCCTGCGGCTGGTCTCCAATGCCCTTCAGTGAGGAGGGGGCGTCGCGACCCTGGTGA
GCGTACGTCAAGCCCTTCCAGTTCGGTGTCTTCGCGGGTCCCCTAGGCCCGCATCCCCCC
GTCAGGCTGCCATGGCTGAAAACGCAGAGGGAGACCTGAACTCCAACCTGCTCCACACCC
CCTACCACACCGGGGACCCTCAGCTAGACACGGCCATCGGGCAGTGGCTGCGTTGGGATA
AGAATCCCAAAACAAAAGAGCAAATCGAAAATCTGTTACGGAATGGGATGAACAAGGAGC
TGCGAGATAGACTTTGTTGCCGAATGACTTTGGGAACTGCAGGACTTCGTTCTGCGATGG
GAGCAGGATTTGGTTATATCAATGACCTTACAGTAATACAGTCAACACAGGGGATGTACA
AATACCTTGAGAGATGTTTCTCAGACTTCAAGCGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTCGCGGCGGGACCGCCTCGGTCCGTTCGCCCAGAGAGACCGGGAGCTGGTCTAGTGGG
GAGCGGGCGGCCGCGCGCCCCCTCTCGTGCTTCCCCGAAGCTGCGCAGGAGCTGGCACAA
ACATCCTGCGGCTGGTCTCCAATGCCCTTCAGTGAGGAGGGGGCGTCGCGACCCTGGTGA
GCGTACGTCAAGCCCTTCCAGTTCGGTGTCTTCGCGGGTCCCCTAGGCCCGCATCCCCCC
GTCAGGCTGCCATGGCTGAAAACGCAGAGGGAGACCTGAACTCCAACCTGCTCCACACCC
CCTACCACACCGGGGACCCTCAGCTAGACACGGCCATCGGGCAGTGGCTGCGTTGGGATA
AGAATCCCAAAACAAAAGAGCAAATCGAAAATCTGTTACGGAATGGGATGAACAAGGAGC
TGCGAGATAGACTTTGTTGCCGAATGACTTTGGGAACTGCAGGACTTCGTTCTGCGATGG
GAGCAGGATTTGGTTATATCAATGACCTTACAGTAATACAGTCAACACAGGGGATGTACA
AATACCTTGAGAGATGTTTCTCAGACTTCAAGCGAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               224-343, - strand, RNAz p=0.686913

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               224-343, - strand, RNAz p=0.686913

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

Help | Less info


               
               1-362, gnl|bosTau2|chr15 (34257952-34257590)
               

               
               1-362, gnl|canFam2|chr21 (26923566-26923031)
               

               
               1-362, gnl|dasNov1|scaffold_9416 (35176-34693)
               

               
               1-362, gnl|echTel1|scaffold_301659 (55870-55366)
               

               
               1-362, gnl|hg17|chr11 (73786666-73787163)
               

               
               1-362, gnl|Hg17|chr11 (73787109-73786744)
               

               
               1-362, gnl|loxAfr1|scaffold_34728 (34589-35099)
               

               
               1-362, gnl|mm7|chr7 (96274364-96273869)
               

               
               1-362, gnl|Mm7|chr7 (96273910-96274276)
               

               
               1-362, gnl|monDom2|scaffold_74 (3040002-3039520)
               

               
               1-362, gnl|oryCun1|scaffold_213188 (60262-60756)
               

               
               1-362, gnl|panTro1|chr9 (75071755-75072252)
               

               
               1-362, gnl|rheMac2|chr14 (72570589-72571098)
               

               
               1-362, gnl|rn3|chr1 (157684584-157684100)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-362, gnl|bosTau2|chr15 (34257952-34257590)
               

               
               1-362, gnl|canFam2|chr21 (26923566-26923031)
               

               
               1-362, gnl|dasNov1|scaffold_9416 (35176-34693)
               

               
               1-362, gnl|echTel1|scaffold_301659 (55870-55366)
               

               
               1-362, gnl|hg17|chr11 (73786666-73787163)
               

               
               1-362, gnl|Hg17|chr11 (73787109-73786744)
               

               
               1-362, gnl|loxAfr1|scaffold_34728 (34589-35099)
               

               
               1-362, gnl|mm7|chr7 (96274364-96273869)
               

               
               1-362, gnl|Mm7|chr7 (96273910-96274276)
               

               
               1-362, gnl|monDom2|scaffold_74 (3040002-3039520)
               

               
               1-362, gnl|oryCun1|scaffold_213188 (60262-60756)
               

               
               1-362, gnl|panTro1|chr9 (75071755-75072252)
               

               
               1-362, gnl|rheMac2|chr14 (72570589-72571098)
               

               
               1-362, gnl|rn3|chr1 (157684584-157684100)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               lnt (0.142308)
               

               
               ese (0.126502)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.142308)
               

               
               ese (0.126502)

	1-362, gnl\|bosTau2\|chr15 (34257952-34257590)
	1-362, gnl\|canFam2\|chr21 (26923566-26923031)
	1-362, gnl\|dasNov1\|scaffold_9416 (35176-34693)
	1-362, gnl\|echTel1\|scaffold_301659 (55870-55366)
	1-362, gnl\|hg17\|chr11 (73786666-73787163)
	1-362, gnl\|Hg17\|chr11 (73787109-73786744)
	1-362, gnl\|loxAfr1\|scaffold_34728 (34589-35099)
	1-362, gnl\|mm7\|chr7 (96274364-96273869)
	1-362, gnl\|Mm7\|chr7 (96273910-96274276)
	1-362, gnl\|monDom2\|scaffold_74 (3040002-3039520)
	1-362, gnl\|oryCun1\|scaffold_213188 (60262-60756)
	1-362, gnl\|panTro1\|chr9 (75071755-75072252)
	1-362, gnl\|rheMac2\|chr14 (72570589-72571098)
	1-362, gnl\|rn3\|chr1 (157684584-157684100)