Non-Coding RNA Search

Ss1.1-rese28c_i1.5

Sequence:


               
               CGCAATGACCCTGTGTTTGAAACCCTGCGCACTGGGGTGATCATGGCAAACAAGGAACGG
AAGAAGGGACAGGCAGATAAGAAAAATCCTCTAGCAGCTATGATGGAAGAGGAGCCAGAG
TCTGCCAGACCAGAGGAAGGCAAACCCCAGGATGGAAACCCTGAAGGAGATAAGAAAGCT
GAAAAGAAGACACCTGATGACAAACACAAGCAGCCTGGCTTCCAGCAGTCTCATTACTTT
GTGGCTCTCTATCGGTTCAAAGCCCTGGAGAAGGACGATCTGGATTTCCCGCCTGGAGAG
AAGATCACCGTCATTGATGACTCCAATGAGGAGTGGTGGCGGGGGAAGATAGGGGAGAAG
GTTGGATTTTTCCCTCCAAATTTCATCATTCGGGTCCGGTCTGGAGAGCGAGTGCACCGT
GTAACAAGATCCTTCGTGGGGAACCGCGAGATAGGGCAGATCACTCTCAAGAAGGACCAG
ATTGTGGTGCAGAAAGGAGATGAAGCCGGCGGCTACGTCAAGGTCTACACCGGCCGCAAG
ATGGGGCTGTTCCCCACCGACTTTCTAGAGGAGATTTAGGCTTGCAGACGCCTGCTGGCG
GGAGATACCCAAACCCCACTATGGGCAGGCCCAGTGGAGGTTGGGAAGAGAAGGGGCGAA
AGCAACTTTACCGCTGGGTGGGGGAGAGGTGGGAAGGCCCGCCGGAACGTGACGGGGCTT
CTGGGAAGGGACTGGTTCCCGCCCCCCTCCCCCTCGGAGGGCGTCGCAGACTTGGTGCCT
GGAGCAGCCTCACCCGCAACCCCTCAAGCCCAGCCTTTGAGAGCTGGAAAAAGAAGGCAT
CTCCACTCGGAGGCGTCCCGAGGAGAGGGGGGTTGAGGCGAAGTGTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCAATGACCCTGTGTTTGAAACCCTGCGCACTGGGGTGATCATGGCAAACAAGGAACGG
AAGAAGGGACAGGCAGATAAGAAAAATCCTCTAGCAGCTATGATGGAAGAGGAGCCAGAG
TCTGCCAGACCAGAGGAAGGCAAACCCCAGGATGGAAACCCTGAAGGAGATAAGAAAGCT
GAAAAGAAGACACCTGATGACAAACACAAGCAGCCTGGCTTCCAGCAGTCTCATTACTTT
GTGGCTCTCTATCGGTTCAAAGCCCTGGAGAAGGACGATCTGGATTTCCCGCCTGGAGAG
AAGATCACCGTCATTGATGACTCCAATGAGGAGTGGTGGCGGGGGAAGATAGGGGAGAAG
GTTGGATTTTTCCCTCCAAATTTCATCATTCGGGTCCGGTCTGGAGAGCGAGTGCACCGT
GTAACAAGATCCTTCGTGGGGAACCGCGAGATAGGGCAGATCACTCTCAAGAAGGACCAG
ATTGTGGTGCAGAAAGGAGATGAAGCCGGCGGCTACGTCAAGGTCTACACCGGCCGCAAG
ATGGGGCTGTTCCCCACCGACTTTCTAGAGGAGATTTAGGCTTGCAGACGCCTGCTGGCG
GGAGATACCCAAACCCCACTATGGGCAGGCCCAGTGGAGGTTGGGAAGAGAAGGGGCGAA
AGCAACTTTACCGCTGGGTGGGGGAGAGGTGGGAAGGCCCGCCGGAACGTGACGGGGCTT
CTGGGAAGGGACTGGTTCCCGCCCCCCTCCCCCTCGGAGGGCGTCGCAGACTTGGTGCCT
GGAGCAGCCTCACCCGCAACCCCTCAAGCCCAGCCTTTGAGAGCTGGAAAAAGAAGGCAT
CTCCACTCGGAGGCGTCCCGAGGAGAGGGGGGTTGAGGCGAAGTGTCC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|21450838|ref|NP_659501.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|21450838|ref|NP_659501.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               479-755, + strand, RNAz p=0.999767

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               479-755, + strand, RNAz p=0.999767

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of BC008069, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC008069, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               479-818, gnl|bosTau2|chr5 (32445756-32446094)
               

               
               479-818, gnl|Hg17|chr12 (55923962-55923628)
               

               
               479-818, gnl|Mm7|chr10 (127009767-127010102)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               479-818, gnl|bosTau2|chr5 (32445756-32446094)
               

               
               479-818, gnl|Hg17|chr12 (55923962-55923628)
               

               
               479-818, gnl|Mm7|chr10 (127009767-127010102)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

Help | Less info


               
               mas (0.42061)
               

               
               ton (0.351)
               

               
               nms (0.213858)
               

               
               cag (0.151194)
               

               
               ssp (0.13552)
               

               
               ese (0.126502)
               

               
               ldo (0.0970026)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.42061)
               

               
               ton (0.351)
               

               
               nms (0.213858)
               

               
               cag (0.151194)
               

               
               ssp (0.13552)
               

               
               ese (0.126502)
               

               
               ldo (0.0970026)

	479-818, gnl\|bosTau2\|chr5 (32445756-32446094)
	479-818, gnl\|Hg17\|chr12 (55923962-55923628)
	479-818, gnl\|Mm7\|chr10 (127009767-127010102)

	mas (0.42061)
	ton (0.351)
	nms (0.213858)
	cag (0.151194)
	ssp (0.13552)
	ese (0.126502)
	ldo (0.0970026)