Ss1.1-rese28c_k5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGTCCGAAAGCCCCAGTGCAGCACAAGCACAGGTGTTCCCATGAACCAACCTGTTCTAG CTCTAGGTTTGCTGTGTCCACCAGTGGCCCTACATGCCTGTGTCTTTCTATCTTTCAAAT GAGGGACAGGGGCCACAGTGAGTATCTGTGGTCTAGATTGGCTGGCCCTTCACAGTGGCT TCTGCAGCCGCAAGCCATGGGGTTTTCTTAAACTGTGAGCCCAAAGCTACTCTGGCAAGT GGTCCAGTCGCCTTGCATTTCAGCCTCAGTACTGGAGCCCTGAGTACACAGACCTGCAGG GACACCTGGACCAGGCTTCCAGCGTGGAAGGGCTCTTGCTCCCTGCCCCCACCCGCCGCC CCGGTCTCAGATAGCGTGCCCTGGCCCAGCGTGTCCAACTTGGCCAAAGACTTCATTGAC CGCCTGCTGACAGTGGACCCCGGCGCCCGTATGACTGCATTGCAGGCCCTGAGGCATCCG TGGGTGGTGAGCATGGCAGCCTCTTCCTCTATGAAGAATCTGCACCGTTCCATCTCCCAG AACCTCCTCAAACGTGCCTCCTCGCGCTGCCAGAGCACCAAATCTGCCCAGTCCAGAGGT TCCAGCCGCTCTACACGCTCCAACAAGTCGCGCCGAGTGCGAGAGCGAGAGCTTCGGGAG CTCAATCTGCGTTACCAGCAGCAGTACAATGGCTGACCCACCTGGCTGGGGAGCAGACAT GGCATGGCCTCAGCCTGGCCACACATTGCTGTGCCATCTGGGCCCGACACCTTCTCTAGA GATAAGCCTGTACGGTCAGTGGTAGGTGAATGGCCCCAGCCCCTTTTCCCTGCCTTCAGG GCTCCCATCTTCACTCTGGGCCTGTGCCTGGCACAACAAAGTGGAGGGAGCCCAGGAGGC TCTGAGCCCTCTGAACTGGGAGCTTGGCCTGGCCCTGATGTTCCATTTGGTGGGCAACTG CTCTGGTACAAATTGGGGGAAAGGCAGGACCTGGCCTTCAGCCTTCTCACCTCTTGGCTC TTCCTCAGATCAAAAGGGCATGCAGTGCCAGAGAAGGGTGTCCTGTATTCCCAGGACTCT TTGGGACAGTTACTTCTGAAATCCCCTCTTTGCTCCACCAAGCCTTCCTCCCTGGCTCCC CACATTCCATGGCATCCTGATCTCATGATTCTGCTCCAGTGAGAGGCCCAGGTAGGCACA CAGCTTGTGCCATGGTTGGTCTCTCAACCCCTAGCTAAGTCTGAATACCCCTCCACTTCC CAGCGAACTTCTTTCATGGTGCCCCCAGGGACCCCTCCCCACCCCAGGCTTCCCAGGGTC TCTGGGGGTAGGGCCATGGTATGGTCCTTGGCCCTCTGGACTGTGTGGCCATGTTGGTAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGTCCGAAAGCCCCAGTGCAGCACAAGCACAGGTGTTCCCATGAACCAACCTGTTCTAG CTCTAGGTTTGCTGTGTCCACCAGTGGCCCTACATGCCTGTGTCTTTCTATCTTTCAAAT GAGGGACAGGGGCCACAGTGAGTATCTGTGGTCTAGATTGGCTGGCCCTTCACAGTGGCT TCTGCAGCCGCAAGCCATGGGGTTTTCTTAAACTGTGAGCCCAAAGCTACTCTGGCAAGT GGTCCAGTCGCCTTGCATTTCAGCCTCAGTACTGGAGCCCTGAGTACACAGACCTGCAGG GACACCTGGACCAGGCTTCCAGCGTGGAAGGGCTCTTGCTCCCTGCCCCCACCCGCCGCC CCGGTCTCAGATAGCGTGCCCTGGCCCAGCGTGTCCAACTTGGCCAAAGACTTCATTGAC CGCCTGCTGACAGTGGACCCCGGCGCCCGTATGACTGCATTGCAGGCCCTGAGGCATCCG TGGGTGGTGAGCATGGCAGCCTCTTCCTCTATGAAGAATCTGCACCGTTCCATCTCCCAG AACCTCCTCAAACGTGCCTCCTCGCGCTGCCAGAGCACCAAATCTGCCCAGTCCAGAGGT TCCAGCCGCTCTACACGCTCCAACAAGTCGCGCCGAGTGCGAGAGCGAGAGCTTCGGGAG CTCAATCTGCGTTACCAGCAGCAGTACAATGGCTGACCCACCTGGCTGGGGAGCAGACAT GGCATGGCCTCAGCCTGGCCACACATTGCTGTGCCATCTGGGCCCGACACCTTCTCTAGA GATAAGCCTGTACGGTCAGTGGTAGGTGAATGGCCCCAGCCCCTTTTCCCTGCCTTCAGG GCTCCCATCTTCACTCTGGGCCTGTGCCTGGCACAACAAAGTGGAGGGAGCCCAGGAGGC TCTGAGCCCTCTGAACTGGGAGCTTGGCCTGGCCCTGATGTTCCATTTGGTGGGCAACTG CTCTGGTACAAATTGGGGGAAAGGCAGGACCTGGCCTTCAGCCTTCTCACCTCTTGGCTC TTCCTCAGATCAAAAGGGCATGCAGTGCCAGAGAAGGGTGTCCTGTATTCCCAGGACTCT TTGGGACAGTTACTTCTGAAATCCCCTCTTTGCTCCACCAAGCCTTCCTCCCTGGCTCCC CACATTCCATGGCATCCTGATCTCATGATTCTGCTCCAGTGAGAGGCCCAGGTAGGCACA CAGCTTGTGCCATGGTTGGTCTCTCAACCCCTAGCTAAGTCTGAATACCCCTCCACTTCC CAGCGAACTTCTTTCATGGTGCCCCCAGGGACCCCTCCCCACCCCAGGCTTCCCAGGGTC TCTGGGGGTAGGGCCATGGTATGGTCCTTGGCCCTCTGGACTGTGTGGCCATGTTGGTAG |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 457-576, - strand, RNAz p=0.54867 | |
| 1021-1172, - strand, RNAz p=0.990504 | |
| 1267-1380, - strand, RNAz p=0.96007 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 457-576, - strand, RNAz p=0.54867 | |
| 1021-1172, - strand, RNAz p=0.990504 | |
| 1267-1380, - strand, RNAz p=0.96007 |
| Predicted microRNA(s): 1 entry(ies) | More info |
| Predicted microRNA(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 451-575, - strand, RNAmicro p=0.999758 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 16-359, gnl|bosTau2|chr18 (14948693-14948327) | |
| 16-359, gnl|Mm7|chr8 (104525188-104525740) | |
| 378-751, gnl|bosTau2|chr18 (14946578-14946208) | |
| 378-751, gnl|canFam2|chr5 (84577704-84577384) | |
| 378-751, gnl|danRer3|chr18 (20993136-20993456) | |
| 378-751, gnl|dasNov1|scaffold_3445 (76965-76645) | |
| 378-751, gnl|echTel1|scaffold_310190 (11738-11419) | |
| 378-751, gnl|fr1|chrUn (9621328-9621634) | |
| 378-751, gnl|galGal2|chr11 (955984-956304) | |
| 378-751, gnl|hg17|chr16 (66518728-66519048) | |
| 378-751, gnl|Hg17|chr16 (66518728-66519108) | |
| 378-751, gnl|loxAfr1|scaffold_73756 (7000-7321) | |
| 378-751, gnl|mm7|chr8 (104528505-104528825) | |
| 378-751, gnl|Mm7|chr8 (104528505-104528832) | |
| 378-751, gnl|monDom2|scaffold_23 (18256184-18255864) | |
| 378-751, gnl|oryCun1|scaffold_204307 (41186-40866) | |
| 378-751, gnl|panTro1|chr18 (60816434-60816754) | |
| 378-751, gnl|rheMac2|chr20 (66262201-66262521) | |
| 378-751, gnl|rn3|chr19 (35776434-35776754) | |
| 378-751, gnl|tetNig1|chrUn_random (18326499-18326180) | |
| 378-751, gnl|xenTro1|scaffold_984 (353743-354062) | |
| 1012-1380, gnl|bosTau2|chr18 (14946120-14945738) | |
| 1012-1380, gnl|Hg17|chr16 (66519180-66519733) | |
| 1012-1380, gnl|Mm7|chr8 (104529049-104529399) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 16-359, gnl|bosTau2|chr18 (14948693-14948327) | |
| 16-359, gnl|Mm7|chr8 (104525188-104525740) | |
| 378-751, gnl|bosTau2|chr18 (14946578-14946208) | |
| 378-751, gnl|canFam2|chr5 (84577704-84577384) | |
| 378-751, gnl|danRer3|chr18 (20993136-20993456) | |
| 378-751, gnl|dasNov1|scaffold_3445 (76965-76645) | |
| 378-751, gnl|echTel1|scaffold_310190 (11738-11419) | |
| 378-751, gnl|fr1|chrUn (9621328-9621634) | |
| 378-751, gnl|galGal2|chr11 (955984-956304) | |
| 378-751, gnl|hg17|chr16 (66518728-66519048) | |
| 378-751, gnl|Hg17|chr16 (66518728-66519108) | |
| 378-751, gnl|loxAfr1|scaffold_73756 (7000-7321) | |
| 378-751, gnl|mm7|chr8 (104528505-104528825) | |
| 378-751, gnl|Mm7|chr8 (104528505-104528832) | |
| 378-751, gnl|monDom2|scaffold_23 (18256184-18255864) | |
| 378-751, gnl|oryCun1|scaffold_204307 (41186-40866) | |
| 378-751, gnl|panTro1|chr18 (60816434-60816754) | |
| 378-751, gnl|rheMac2|chr20 (66262201-66262521) | |
| 378-751, gnl|rn3|chr19 (35776434-35776754) | |
| 378-751, gnl|tetNig1|chrUn_random (18326499-18326180) | |
| 378-751, gnl|xenTro1|scaffold_984 (353743-354062) | |
| 1012-1380, gnl|bosTau2|chr18 (14946120-14945738) | |
| 1012-1380, gnl|Hg17|chr16 (66519180-66519733) | |
| 1012-1380, gnl|Mm7|chr8 (104529049-104529399) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ese (0.126502) |