Non-Coding RNA Search

Ss1.1-rese28c_k9.5

Sequence:


               
               GACTGTGACGCAGCCGGAGGCTGTGGGAAGGCAGGAGGCTGAGGGAAGGCAGGAGGCTGC
GGGAAGGCAGGAGGTTGCGGGAAGGCTGGTGGGGGCGTGCCTGCCAGCCACGGAGACACA
GGCGGTGGCTGAAGGCCAGGCCAGGTGGGAAAGGGTGGTGGGGCTCCCAGGGGCCCCTGT
TCTCCAAAAGGCGCTGGGGGTGCAGAGGGCAGCTGAGCCCCAAATGGCATGTAGCTCGCG
AAAGCCATCTGAAGCTTCTCCAACTGCGTCTGGTAGGACAGGTAGCTATGGATGTAGGCT
GAGCACGCCGCACCCCACGCCGCTGCCTGCTGCCGCTCACCCTCCAGGTGCTGGCTCTGC
TCCCGCAGGGCCCGGGCGTCCTGTTCCTTCCTCCACTTGGCTTTGCGGGCCCGCAGCTTC
TGGGGCTTGAAGGTGTTGGCCACCTTCCTAGCGAAGATCTGGGAGTGCTCGTCCAGCCAC
ACCAGGCTACTGAGCAGACTGGACGTGCCGGGGCTGAGCTGGGCCAGGGAACTCTCCAGG
GGCAGGAAGGGGATCACGCAGTCCTGCCACCCGGGCCGCGTGAGGCTGCTCATCAGAGAC
TGGTTTGCCTGGTGCTGGCTCAGACGGCAGTCGAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACTGTGACGCAGCCGGAGGCTGTGGGAAGGCAGGAGGCTGAGGGAAGGCAGGAGGCTGC
GGGAAGGCAGGAGGTTGCGGGAAGGCTGGTGGGGGCGTGCCTGCCAGCCACGGAGACACA
GGCGGTGGCTGAAGGCCAGGCCAGGTGGGAAAGGGTGGTGGGGCTCCCAGGGGCCCCTGT
TCTCCAAAAGGCGCTGGGGGTGCAGAGGGCAGCTGAGCCCCAAATGGCATGTAGCTCGCG
AAAGCCATCTGAAGCTTCTCCAACTGCGTCTGGTAGGACAGGTAGCTATGGATGTAGGCT
GAGCACGCCGCACCCCACGCCGCTGCCTGCTGCCGCTCACCCTCCAGGTGCTGGCTCTGC
TCCCGCAGGGCCCGGGCGTCCTGTTCCTTCCTCCACTTGGCTTTGCGGGCCCGCAGCTTC
TGGGGCTTGAAGGTGTTGGCCACCTTCCTAGCGAAGATCTGGGAGTGCTCGTCCAGCCAC
ACCAGGCTACTGAGCAGACTGGACGTGCCGGGGCTGAGCTGGGCCAGGGAACTCTCCAGG
GGCAGGAAGGGGATCACGCAGTCCTGCCACCCGGGCCGCGTGAGGCTGCTCATCAGAGAC
TGGTTTGCCTGGTGCTGGCTCAGACGGCAGTCGAAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|33874778|gb|AAH09860.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|33874778|gb|AAH09860.2|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               89-200, - strand, RNAz p=0.7203

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               89-200, - strand, RNAz p=0.7203

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               52-636, gnl|bosTau2|chr7 (14829437-14828865)
               

               
               52-636, gnl|Hg17|chr19 (4767447-4768013)
               

               
               52-636, gnl|Mm7|chr17 (54428415-54428960)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               52-636, gnl|bosTau2|chr7 (14829437-14828865)
               

               
               52-636, gnl|Hg17|chr19 (4767447-4768013)
               

               
               52-636, gnl|Mm7|chr17 (54428415-54428960)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ese (0.126502)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.126502)

	52-636, gnl\|bosTau2\|chr7 (14829437-14828865)
	52-636, gnl\|Hg17\|chr19 (4767447-4768013)
	52-636, gnl\|Mm7\|chr17 (54428415-54428960)