Non-Coding RNA Search

Ss1.1-rese30c_c2.5

Sequence:


               
               CTATGATCTAGAACTGAAAATGATTTCCACTCCTTCACCAAAGAAAAGCATGAAGATGAC
CATGTATGCCGATGAGGTGGAATCGCAGTTGAAAAATATCAGGAACTCCATGAGGGCAGA
CACTCTATCCACAAGCAATATAAAAAACCGAATTGGTAACAAATTACCGCCTGAGAAATT
TGCGGATGTCCGACATTTGTTAGATGAAAAACGTCAGCACACACGTCCACGGCCACCAAG
CAGCAATACTAAAACAGATATACGCCAGCGATTAGGAAAAAGACCATATTCTCCAGAAAA
GCCTTTTAGTAGTAATCCGGTCGTTCGGAGAGAGCCCTTTTCTGATGTCCATAGTAGGCT
CGGCGTTCCCAGGCAAGACGTTAAAGGCCTCTACTCGGATACTCGGGAGAAGAAATCAGG
TAGTTTATGGACTCGCTTAGGATCTGCAACCAAGACCAAAGAAAAGAACACGAAGAAAGT
GGATCACAGGACGCCCGGCACTGAGGAGGATGACTCGGAGCTGCAGAGGGCGTGGGGGGC
TCTGATTAAGGAGAAAGAACAGTCTCGCCAAAAGAAGAGCCGGTTAGATAACTTACCATC
TCTCCAGATTGAAGTTAGTCGGGAAAGCAGCTCTGGTTCAGAGGCAGAGTCATGATGCCG
TTGGAGCCAAGGCAGCTGCCCCAAAGCCTGCCGTCCTTGCGCTGGGTGGGGCGCGCAGGG
GGACCCCTGCCTGCGGGCATGGGCGCCCCTTCGTCTTACACAGTCACACCCGCTCTTGCT
CCATCAGCAGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTATGATCTAGAACTGAAAATGATTTCCACTCCTTCACCAAAGAAAAGCATGAAGATGAC
CATGTATGCCGATGAGGTGGAATCGCAGTTGAAAAATATCAGGAACTCCATGAGGGCAGA
CACTCTATCCACAAGCAATATAAAAAACCGAATTGGTAACAAATTACCGCCTGAGAAATT
TGCGGATGTCCGACATTTGTTAGATGAAAAACGTCAGCACACACGTCCACGGCCACCAAG
CAGCAATACTAAAACAGATATACGCCAGCGATTAGGAAAAAGACCATATTCTCCAGAAAA
GCCTTTTAGTAGTAATCCGGTCGTTCGGAGAGAGCCCTTTTCTGATGTCCATAGTAGGCT
CGGCGTTCCCAGGCAAGACGTTAAAGGCCTCTACTCGGATACTCGGGAGAAGAAATCAGG
TAGTTTATGGACTCGCTTAGGATCTGCAACCAAGACCAAAGAAAAGAACACGAAGAAAGT
GGATCACAGGACGCCCGGCACTGAGGAGGATGACTCGGAGCTGCAGAGGGCGTGGGGGGC
TCTGATTAAGGAGAAAGAACAGTCTCGCCAAAAGAAGAGCCGGTTAGATAACTTACCATC
TCTCCAGATTGAAGTTAGTCGGGAAAGCAGCTCTGGTTCAGAGGCAGAGTCATGATGCCG
TTGGAGCCAAGGCAGCTGCCCCAAAGCCTGCCGTCCTTGCGCTGGGTGGGGCGCGCAGGG
GGACCCCTGCCTGCGGGCATGGGCGCCCCTTCGTCTTACACAGTCACACCCGCTCTTGCT
CCATCAGCAGGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|7799418|emb|CAB91001.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|7799418|emb|CAB91001.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               536-655, + strand, RNAz p=0.581713

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               536-655, + strand, RNAz p=0.581713

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_018553, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_018553, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               101-261, gnl|bosTau2|chr19 (19036105-19035945)
               

               
               101-261, gnl|Hg17|chr17 (3666315-3666155)
               

               
               101-261, gnl|Mm7|chr11 (73157187-73157347)
               


               
               417-792, gnl|bosTau2|chr19 (19033625-19033245)
               

               
               417-792, gnl|Hg17|chr17 (3663325-3662943)
               

               
               417-792, gnl|Mm7|chr11 (73160512-73160883)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               101-261, gnl|bosTau2|chr19 (19036105-19035945)
               

               
               101-261, gnl|Hg17|chr17 (3666315-3666155)
               

               
               101-261, gnl|Mm7|chr11 (73157187-73157347)
               


               
               417-792, gnl|bosTau2|chr19 (19033625-19033245)
               

               
               417-792, gnl|Hg17|chr17 (3663325-3662943)
               

               
               417-792, gnl|Mm7|chr11 (73160512-73160883)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               nlu (0.191681)
               

               
               eye (0.170503)
               

               
               pla (0.133672)
               

               
               ese (0.126502)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               eye (0.170503)
               

               
               pla (0.133672)
               

               
               ese (0.126502)

	101-261, gnl\|bosTau2\|chr19 (19036105-19035945)
	101-261, gnl\|Hg17\|chr17 (3666315-3666155)
	101-261, gnl\|Mm7\|chr11 (73157187-73157347)

	417-792, gnl\|bosTau2\|chr19 (19033625-19033245)
	417-792, gnl\|Hg17\|chr17 (3663325-3662943)
	417-792, gnl\|Mm7\|chr11 (73160512-73160883)