Non-Coding RNA Search

Ss1.1-rese30c_o19.5

Sequence:


               
               GCCGGAGCAGATGGGCCAGATCCCTGGGACAGGCTGGCCAGGACAAGGCTGCGCCAGGCT
GGGAGGCTCGGGGCTCCCCATGCCCCCGCGCAGTGACTGCTTCCCCGACGTGAGCCGCCT
CAGATGTGGCCTTGACTCCATCCTGCTAATGCCTCCCCAGACAGGGCTCCAGTCCCACAG
CCACAGCCCAGATGCCATGGGCCCTGCTGTTCCTGCCCGGTTCCCCCTTCTGGAACTGCT
GCTCTGGTGACCCCTGCTTGGCCTCACCTGGGGCATCCCTGGCCTGGGCTTGCTCCTAGC
TGGAGTGGGAGGGCTGGGGGTCCTGGCGTGTGGGGTTTCCGCCCTTGTGGATGGGAGGCC
CTTGGTGGGGCAGGAAGGCAGCACAGCCGAGTCCCAAGGCCCAGCTGCCAGGGGAGACAG
AGCAGGCTTTGTGAAAGAGGACCTCTGTGCCCCCACCCGCCTCCCCAATCCCAACAGATA
AGGCCCGGCACACACCATCTGGCTGGGCCCGGCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGGAGCAGATGGGCCAGATCCCTGGGACAGGCTGGCCAGGACAAGGCTGCGCCAGGCT
GGGAGGCTCGGGGCTCCCCATGCCCCCGCGCAGTGACTGCTTCCCCGACGTGAGCCGCCT
CAGATGTGGCCTTGACTCCATCCTGCTAATGCCTCCCCAGACAGGGCTCCAGTCCCACAG
CCACAGCCCAGATGCCATGGGCCCTGCTGTTCCTGCCCGGTTCCCCCTTCTGGAACTGCT
GCTCTGGTGACCCCTGCTTGGCCTCACCTGGGGCATCCCTGGCCTGGGCTTGCTCCTAGC
TGGAGTGGGAGGGCTGGGGGTCCTGGCGTGTGGGGTTTCCGCCCTTGTGGATGGGAGGCC
CTTGGTGGGGCAGGAAGGCAGCACAGCCGAGTCCCAAGGCCCAGCTGCCAGGGGAGACAG
AGCAGGCTTTGTGAAAGAGGACCTCTGTGCCCCCACCCGCCTCCCCAATCCCAACAGATA
AGGCCCGGCACACACCATCTGGCTGGGCCCGGCCCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               155-377, + strand, RNAz p=0.999939

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               155-377, + strand, RNAz p=0.999939

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               256-381, + strand, RNAmicro p=0.999869

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               256-381, + strand, RNAmicro p=0.999869

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               185-375, 225868 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BF076331.1|), 
blast E-value=0, identity=88.48% 
               

               
               182-375, 468517 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BI775808.1|), 
blast E-value=0, identity=88.66% 
               

               
               182-375, 963028 MARC 2BOV Bos taurus cDNA 3', mRNA sequence (gb|CK774285.1|), 
blast E-value=6.00036e-42, identity=87.11% 
               

               
               155-377, POSM0605001_O13R porcine skeletal muscle cDNA library (PoSM) Sus 
(gb|DV896376.1|), blast E-value=0, identity=100% 
               

               
               182-335, LB0309.CR_A20 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|DV934983.1|), 
blast E-value=1.96182e-44, identity=90.26% 
               

               
               182-375, sh1-afh02_l0.s2 adult sheep fracture callus pool Ovis aries cDNA, 
(gb|DY476930.1|), blast E-value=0, identity=90.21%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               185-375, 225868 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BF076331.1|), 
blast E-value=0, identity=88.48% 
               

               
               182-375, 468517 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BI775808.1|), 
blast E-value=0, identity=88.66% 
               

               
               182-375, 963028 MARC 2BOV Bos taurus cDNA 3', mRNA sequence (gb|CK774285.1|), 
blast E-value=6.00036e-42, identity=87.11% 
               

               
               155-377, POSM0605001_O13R porcine skeletal muscle cDNA library (PoSM) Sus 
(gb|DV896376.1|), blast E-value=0, identity=100% 
               

               
               182-335, LB0309.CR_A20 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|DV934983.1|), 
blast E-value=1.96182e-44, identity=90.26% 
               

               
               182-375, sh1-afh02_l0.s2 adult sheep fracture callus pool Ovis aries cDNA, 
(gb|DY476930.1|), blast E-value=0, identity=90.21%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_033118, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_033118, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-516, gnl|bosTau2|chr13 (44041076-44041592)
               

               
               1-516, gnl|Hg17|chr20 (29885331-29885860)
               

               
               1-516, gnl|Mm7|chr2 (152663081-152663558)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-516, gnl|bosTau2|chr13 (44041076-44041592)
               

               
               1-516, gnl|Hg17|chr20 (29885331-29885860)
               

               
               1-516, gnl|Mm7|chr2 (152663081-152663558)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               mas (0.210305)
               

               
               ese (0.126502)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)
               

               
               ese (0.126502)

	185-375, 225868 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb\|BF076331.1\|), blast E-value=0, identity=88.48%
	182-375, 468517 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb\|BI775808.1\|), blast E-value=0, identity=88.66%
	182-375, 963028 MARC 2BOV Bos taurus cDNA 3', mRNA sequence (gb\|CK774285.1\|), blast E-value=6.00036e-42, identity=87.11%
	155-377, POSM0605001_O13R porcine skeletal muscle cDNA library (PoSM) Sus (gb\|DV896376.1\|), blast E-value=0, identity=100%
	182-335, LB0309.CR_A20 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb\|DV934983.1\|), blast E-value=1.96182e-44, identity=90.26%
	182-375, sh1-afh02_l0.s2 adult sheep fracture callus pool Ovis aries cDNA, (gb\|DY476930.1\|), blast E-value=0, identity=90.21%

	1-516, gnl\|bosTau2\|chr13 (44041076-44041592)
	1-516, gnl\|Hg17\|chr20 (29885331-29885860)
	1-516, gnl\|Mm7\|chr2 (152663081-152663558)