Non-Coding RNA Search

Ss1.1-rese30c_p6.5

Sequence:


               
               AGAGGAGAGGCATACACAAACGATGATGCACACGCAGAAGTATTTGTTAATGACCAAGGG
TTGGGGAAGGTGTTAGTCATGGCTATGCATCTTACCCTTTCCAGAAGAATAGAGAGGCTG
CTGCAGCCCCGTGCTTTCTCCTGCTGCCGGCCGATTGCTTGCTCTGAGCTAACCCTCTAT
CTAACCCTTGGGAGTCCGTGTGCAGCAGCGTGCTGATGTAAGCTGCATCGGGGGTGAAAT
GGGAGCTCCCGCTATGGCACTGGCTCAAGTAGCTAATCTAAAGAGAAAGTATTTGGGGGA
AGACATCTTGGTTGCACCCCTCACCGCATCTTGACTAATTGCTGCCAACTCCGGGGGCTC
CCAGGGACAATCGCATTGTTCTTTCCTCGCCAAGGGGCAGTCGTGTTAACCGTTTCTTAA
TTTCTCCTGCACAGATCAAGCAAAAGTAGATAATCTGCCAGAAGAATTAGTACGTAGTGC
TGAAGATGTTTCCACAGTGCCTTCTGAGTGTTTATAGCGGAGACTTCGGCAATCTGGAAG
TGAGAGGAAGTACAAGTCTGTTCCTCGACTATGTGGACTCACTGAAGGAGTTGCATGTCT
TTGTGGCCCAGTGTAAAGACTTAGCAGCAGCGGATGTTAAGAAGCAGCGTTCGGACCCAT
ATGTAAAGACTTACCTGTTACCAGACAAGGGCAAAATGGGCAAGAAGACGGCAGTGTGAT
TGAAGAAAACGTTGAATCCTGTGTATAACGAGATACTACGGTATAAAATTGAAAAGCAGA
TCTTAAAGACGCAGAAGCTGAACCTCTCCGTTTGGCATCGAGATACATTTAAGCGCAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGGAGAGGCATACACAAACGATGATGCACACGCAGAAGTATTTGTTAATGACCAAGGG
TTGGGGAAGGTGTTAGTCATGGCTATGCATCTTACCCTTTCCAGAAGAATAGAGAGGCTG
CTGCAGCCCCGTGCTTTCTCCTGCTGCCGGCCGATTGCTTGCTCTGAGCTAACCCTCTAT
CTAACCCTTGGGAGTCCGTGTGCAGCAGCGTGCTGATGTAAGCTGCATCGGGGGTGAAAT
GGGAGCTCCCGCTATGGCACTGGCTCAAGTAGCTAATCTAAAGAGAAAGTATTTGGGGGA
AGACATCTTGGTTGCACCCCTCACCGCATCTTGACTAATTGCTGCCAACTCCGGGGGCTC
CCAGGGACAATCGCATTGTTCTTTCCTCGCCAAGGGGCAGTCGTGTTAACCGTTTCTTAA
TTTCTCCTGCACAGATCAAGCAAAAGTAGATAATCTGCCAGAAGAATTAGTACGTAGTGC
TGAAGATGTTTCCACAGTGCCTTCTGAGTGTTTATAGCGGAGACTTCGGCAATCTGGAAG
TGAGAGGAAGTACAAGTCTGTTCCTCGACTATGTGGACTCACTGAAGGAGTTGCATGTCT
TTGTGGCCCAGTGTAAAGACTTAGCAGCAGCGGATGTTAAGAAGCAGCGTTCGGACCCAT
ATGTAAAGACTTACCTGTTACCAGACAAGGGCAAAATGGGCAAGAAGACGGCAGTGTGAT
TGAAGAAAACGTTGAATCCTGTGTATAACGAGATACTACGGTATAAAATTGAAAAGCAGA
TCTTAAAGACGCAGAAGCTGAACCTCTCCGTTTGGCATCGAGATACATTTAAGCGCAATA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9BQS1_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9BQS1_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               125-280, - strand, RNAz p=0.783725
               

               
               359-488, - strand, RNAz p=0.756243

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               125-280, - strand, RNAz p=0.783725
               

               
               359-488, - strand, RNAz p=0.756243

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               46-192, - strand, RNAmicro p=0.998438

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               46-192, - strand, RNAmicro p=0.998438

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               6-488, gnl|bosTau2|chr29 (4408254-4407776)
               

               
               6-488, gnl|canFam2|chr21 (16733611-16733249)
               

               
               6-488, gnl|dasNov1|scaffold_487 (88738-88385)
               

               
               6-488, gnl|echTel1|scaffold_324682 (113328-112967)
               

               
               6-488, gnl|galGal2|chr1 (182017458-182017830)
               

               
               6-488, gnl|hg17|chr11 (85107426-85107784)
               

               
               6-488, gnl|Hg17|chr11 (85107953-85107481)
               

               
               6-488, gnl|loxAfr1|scaffold_4209 (84751-84386)
               

               
               6-488, gnl|mm7|chr7 (86394499-86394128)
               

               
               6-488, gnl|Mm7|chr7 (86393958-86394442)
               

               
               6-488, gnl|monDom2|scaffold_46 (2056111-2055735)
               

               
               6-488, gnl|oryCun1|scaffold_203455 (52941-52579)
               

               
               6-488, gnl|panTro1|chr9 (86756841-86757199)
               

               
               6-488, gnl|rheMac2|chr14 (84046253-84046611)
               

               
               6-488, gnl|rn3|chr1 (147138771-147138406)
               


               
               505-665, gnl|bosTau2|chr29 (4398394-4398234)
               

               
               505-665, gnl|Hg17|chr11 (85098175-85098015)
               

               
               505-665, gnl|Mm7|chr7 (86403376-86403536)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-488, gnl|bosTau2|chr29 (4408254-4407776)
               

               
               6-488, gnl|canFam2|chr21 (16733611-16733249)
               

               
               6-488, gnl|dasNov1|scaffold_487 (88738-88385)
               

               
               6-488, gnl|echTel1|scaffold_324682 (113328-112967)
               

               
               6-488, gnl|galGal2|chr1 (182017458-182017830)
               

               
               6-488, gnl|hg17|chr11 (85107426-85107784)
               

               
               6-488, gnl|Hg17|chr11 (85107953-85107481)
               

               
               6-488, gnl|loxAfr1|scaffold_4209 (84751-84386)
               

               
               6-488, gnl|mm7|chr7 (86394499-86394128)
               

               
               6-488, gnl|Mm7|chr7 (86393958-86394442)
               

               
               6-488, gnl|monDom2|scaffold_46 (2056111-2055735)
               

               
               6-488, gnl|oryCun1|scaffold_203455 (52941-52579)
               

               
               6-488, gnl|panTro1|chr9 (86756841-86757199)
               

               
               6-488, gnl|rheMac2|chr14 (84046253-84046611)
               

               
               6-488, gnl|rn3|chr1 (147138771-147138406)
               


               
               505-665, gnl|bosTau2|chr29 (4398394-4398234)
               

               
               505-665, gnl|Hg17|chr11 (85098175-85098015)
               

               
               505-665, gnl|Mm7|chr7 (86403376-86403536)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ese (0.126502)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.126502)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)

	125-280, - strand, RNAz p=0.783725
	359-488, - strand, RNAz p=0.756243

	6-488, gnl\|bosTau2\|chr29 (4408254-4407776)
	6-488, gnl\|canFam2\|chr21 (16733611-16733249)
	6-488, gnl\|dasNov1\|scaffold_487 (88738-88385)
	6-488, gnl\|echTel1\|scaffold_324682 (113328-112967)
	6-488, gnl\|galGal2\|chr1 (182017458-182017830)
	6-488, gnl\|hg17\|chr11 (85107426-85107784)
	6-488, gnl\|Hg17\|chr11 (85107953-85107481)
	6-488, gnl\|loxAfr1\|scaffold_4209 (84751-84386)
	6-488, gnl\|mm7\|chr7 (86394499-86394128)
	6-488, gnl\|Mm7\|chr7 (86393958-86394442)
	6-488, gnl\|monDom2\|scaffold_46 (2056111-2055735)
	6-488, gnl\|oryCun1\|scaffold_203455 (52941-52579)
	6-488, gnl\|panTro1\|chr9 (86756841-86757199)
	6-488, gnl\|rheMac2\|chr14 (84046253-84046611)
	6-488, gnl\|rn3\|chr1 (147138771-147138406)

	505-665, gnl\|bosTau2\|chr29 (4398394-4398234)
	505-665, gnl\|Hg17\|chr11 (85098175-85098015)
	505-665, gnl\|Mm7\|chr7 (86403376-86403536)