Ss1.1-rese31c_a17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAGAGAGGCTCGCGTCTTTATTCCCGCT CGGTAGGCAGGGGTCCTGTGGCTGTCAGAGTGGGCACCTCTGGGCTGGTGGCTCTCACCT CTTGGCGGCTGGCAGCTTCAGCCACTTGGGCACCTTGCCCAGGTCCCTCCTCACGGGCTG GGCCACCCCAGGGCTGGGTGCGGGGGGCCCTGCTGCCTCTTCCTCAGAGGTTGGTTCCAA CTCCAGGGGCACAGAGGCAGGGGCTGGCAGCGGGGATGGGGTCCCGGCGGCCCTGGACAT GCACCTGGCCACCAGGACGTCAGCAGCAGATGGGGACACAGTGTGTTCCAGCAGCCTGGG CTCCAAGTAGATGCCTGTCGGCTCCTCGGGTCCGAAATGCACAAGGGCAGCGGGGAAGAG GCTGGCCTGAAAAAGGGTCAGCGTGTGGTCGTCCAGGATGGTCTTGGGCGGAGCGATGAA CAGGTGGAAGGGCAGCGCGGGGTTGCCCAGGTGGCTCCTCACAAAGTCCCGTAAGTCCCC CACGGTCTCACTGGGGCGGAAGAAGCCCTGCAGGATGTGGCGGTCCGGAAACAGGACCCT CAGGACCACCTTAGGGTAGCGCTGCAGCTTCTCCTTCATCTGGGCCTCCCGGAGGGCCTT GGTCACCAGGGGTGCTTCTTCCAGGCGCTTCCGCTCGCTCTTGAGCTGGGCCAGGCGCCT TCGGACGTCGTCCACGGTCACCTCGAAGAACTCATCAGGCAGCTCCGCAGGCCAGGCCTG AAGCAGCACCTCCAGGTCGGGGTGGCACACCACGGGGGCTCGGTCCACCGGCGGCTCCAG CTCTGGCTCCGGCTCCTGCTGGGGCTCCTGGCCAGGCCGCGACTTCTTTGGCTTCGAGGG GCCTGCGGGACTGGAGAAGGACTTGGGTGGTTTGGCTGAAGGTGACACCAGAGGCCTTGC GGCCCCGCAGGGCCCCCCCAGTCGCTGTCCCCCGCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAGAGAGGCTCGCGTCTTTATTCCCGCT CGGTAGGCAGGGGTCCTGTGGCTGTCAGAGTGGGCACCTCTGGGCTGGTGGCTCTCACCT CTTGGCGGCTGGCAGCTTCAGCCACTTGGGCACCTTGCCCAGGTCCCTCCTCACGGGCTG GGCCACCCCAGGGCTGGGTGCGGGGGGCCCTGCTGCCTCTTCCTCAGAGGTTGGTTCCAA CTCCAGGGGCACAGAGGCAGGGGCTGGCAGCGGGGATGGGGTCCCGGCGGCCCTGGACAT GCACCTGGCCACCAGGACGTCAGCAGCAGATGGGGACACAGTGTGTTCCAGCAGCCTGGG CTCCAAGTAGATGCCTGTCGGCTCCTCGGGTCCGAAATGCACAAGGGCAGCGGGGAAGAG GCTGGCCTGAAAAAGGGTCAGCGTGTGGTCGTCCAGGATGGTCTTGGGCGGAGCGATGAA CAGGTGGAAGGGCAGCGCGGGGTTGCCCAGGTGGCTCCTCACAAAGTCCCGTAAGTCCCC CACGGTCTCACTGGGGCGGAAGAAGCCCTGCAGGATGTGGCGGTCCGGAAACAGGACCCT CAGGACCACCTTAGGGTAGCGCTGCAGCTTCTCCTTCATCTGGGCCTCCCGGAGGGCCTT GGTCACCAGGGGTGCTTCTTCCAGGCGCTTCCGCTCGCTCTTGAGCTGGGCCAGGCGCCT TCGGACGTCGTCCACGGTCACCTCGAAGAACTCATCAGGCAGCTCCGCAGGCCAGGCCTG AAGCAGCACCTCCAGGTCGGGGTGGCACACCACGGGGGCTCGGTCCACCGGCGGCTCCAG CTCTGGCTCCGGCTCCTGCTGGGGCTCCTGGCCAGGCCGCGACTTCTTTGGCTTCGAGGG GCCTGCGGGACTGGAGAAGGACTTGGGTGGTTTGGCTGAAGGTGACACCAGAGGCCTTGC GGCCCCGCAGGGCCCCCCCAGTCGCTGTCCCCCGCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 129-243, - strand, RNAz p=0.56196 | |
| 845-964, + strand, RNAz p=0.887837 | |
| 885-994, - strand, RNAz p=0.697281 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 129-243, - strand, RNAz p=0.56196 | |
| 845-964, + strand, RNAz p=0.887837 | |
| 885-994, - strand, RNAz p=0.697281 |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 129-307, gnl|bosTau2|chr19 (45645316-45645138) | |
| 129-307, gnl|canFam2|chr9 (3308270-3308111) | |
| 129-307, gnl|dasNov1|scaffold_126775 (6423-6546) | |
| 129-307, gnl|hg17|chr17 (77568081-77568234) | |
| 129-307, gnl|Hg17|chr17 (77568278-77568103) | |
| 129-307, gnl|mm7|chr11 (120818090-120818247) | |
| 129-307, gnl|Mm7|chr11 (120818291-120818113) | |
| 129-307, gnl|monDom2|scaffold_18 (15374778-15374939) | |
| 129-307, gnl|panTro1|chr19 (81332222-81332375) | |
| 129-307, gnl|rheMac2|chr16 (77455847-77456000) | |
| 129-307, gnl|rn3|chr2 (237845292-237845412) | |
| 129-307, gnl|tetNig1|chr18 (2163762-2163593) | |
| 129-307, gnl|xenTro1|scaffold_2485 (22462-22612) | |
| 845-996, gnl|bosTau2|chr19 (45631221-45631070) | |
| 845-996, gnl|canFam2|chr9 (3319039-3318896) | |
| 845-996, gnl|dasNov1|scaffold_126775 (5756-5896) | |
| 845-996, gnl|echTel1|scaffold_236223 (1069-1212) | |
| 845-996, gnl|galGal2|chr18 (4832981-4832832) | |
| 845-996, gnl|hg17|chr17 (77547811-77547954) | |
| 845-996, gnl|Hg17|chr17 (77547968-77547817) | |
| 845-996, gnl|loxAfr1|scaffold_43585 (13605-13748) | |
| 845-996, gnl|mm7|chr11 (120798228-120798371) | |
| 845-996, gnl|Mm7|chr11 (120798385-120798234) | |
| 845-996, gnl|monDom2|scaffold_18 (15287986-15288129) | |
| 845-996, gnl|panTro1|chr19 (81310890-81311033) | |
| 845-996, gnl|rheMac2|chr16 (77432792-77432935) | |
| 845-996, gnl|rn3|chr10 (110098244-110098387) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 129-307, gnl|bosTau2|chr19 (45645316-45645138) | |
| 129-307, gnl|canFam2|chr9 (3308270-3308111) | |
| 129-307, gnl|dasNov1|scaffold_126775 (6423-6546) | |
| 129-307, gnl|hg17|chr17 (77568081-77568234) | |
| 129-307, gnl|Hg17|chr17 (77568278-77568103) | |
| 129-307, gnl|mm7|chr11 (120818090-120818247) | |
| 129-307, gnl|Mm7|chr11 (120818291-120818113) | |
| 129-307, gnl|monDom2|scaffold_18 (15374778-15374939) | |
| 129-307, gnl|panTro1|chr19 (81332222-81332375) | |
| 129-307, gnl|rheMac2|chr16 (77455847-77456000) | |
| 129-307, gnl|rn3|chr2 (237845292-237845412) | |
| 129-307, gnl|tetNig1|chr18 (2163762-2163593) | |
| 129-307, gnl|xenTro1|scaffold_2485 (22462-22612) | |
| 845-996, gnl|bosTau2|chr19 (45631221-45631070) | |
| 845-996, gnl|canFam2|chr9 (3319039-3318896) | |
| 845-996, gnl|dasNov1|scaffold_126775 (5756-5896) | |
| 845-996, gnl|echTel1|scaffold_236223 (1069-1212) | |
| 845-996, gnl|galGal2|chr18 (4832981-4832832) | |
| 845-996, gnl|hg17|chr17 (77547811-77547954) | |
| 845-996, gnl|Hg17|chr17 (77547968-77547817) | |
| 845-996, gnl|loxAfr1|scaffold_43585 (13605-13748) | |
| 845-996, gnl|mm7|chr11 (120798228-120798371) | |
| 845-996, gnl|Mm7|chr11 (120798385-120798234) | |
| 845-996, gnl|monDom2|scaffold_18 (15287986-15288129) | |
| 845-996, gnl|panTro1|chr19 (81310890-81311033) | |
| 845-996, gnl|rheMac2|chr16 (77432792-77432935) | |
| 845-996, gnl|rn3|chr10 (110098244-110098387) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| elu (0.385356) | |
| ese (0.379507) | |
| fcc (0.197785) | |
| nep (0.183925) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| cli (0.152812) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| eru (0.120048) | |
| med (0.116252) | |
| ecc (0.115035) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| ese (0.379507) | |
| fcc (0.197785) | |
| nep (0.183925) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| cli (0.152812) | |
| hlv (0.139256) | |
| nmm (0.132802) | |
| eru (0.120048) | |
| med (0.116252) | |
| ecc (0.115035) |