Non-Coding RNA Search

Ss1.1-rese31c_j12.5

Sequence:


               
               ACCTTCAGGCCATGTGGTCACCAAGCAGAGCAAGCCCCCCCTTTCTCTTCCCAGTCACAT
GGCTGTGTGTGGATGGCTTTAATTTTAGGAGAAGGGCGATTAACACTTTTGACAGTATTT
GGTTTTGCTTTGATTCGGGGGGTTGTTTTGTTTGGGTGGTTGTTTGGGAAAAACAGTTTA
TAAACTGATTTTGGTAGTTTGGGTATTTAAAGCAAAAAAAAAAAACCAAACCTTTGGGTA
ACTGCACTGCATCCTTTGAACAGAGCAGTGCCAACTTATGAAGACGCTGCAGCTTGAAAG
GGGCTTTGCTGGGGGCGTCCCCTTAGCTGAGTACAAGCCCTCTTTGTTGCCTGCTTTGTG
CTTTCTGCACCAGACAGCCTGATGGAACATTTGCACCTGAGTTGTACATTTTTGAGGTGT
GCAGGGCAGCCTGGACACACCGTTTAGATTCTATGTGTATAGTACCCCATGCTCTCTCAC
ATGCCCTCTCTGGAAAGCATATGTACAGAATACACGTCATGTCCACTTGAAACCTGGTCA
CCTGGTGGAAACCCCTGGGGATTCTTCCTTAGGCATGACGGACGATTTCCATTCATCAGT
TTGTTTTGTTTTCCTTTTTCTTTAACTCTTGGACTTTTAAACCCTGCATATGATTCAATA
GGGTTTGAGATATATGTGCGACACTGACAGGTAAAACAGTACTAGCATCTTGGTTTCCTG
CCACCTTTTCAAAAAGATTTTTCTGATCGCTGTATTATACTGGGAAGGTTTTAAACAACC
CAGCTAAGGCTTCATTGAAGGTTGAGCGCAAAGTAGAGGAAAAAGCATTAGAAAGTGTTA
GCACCTTGCTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCTTCAGGCCATGTGGTCACCAAGCAGAGCAAGCCCCCCCTTTCTCTTCCCAGTCACAT
GGCTGTGTGTGGATGGCTTTAATTTTAGGAGAAGGGCGATTAACACTTTTGACAGTATTT
GGTTTTGCTTTGATTCGGGGGGTTGTTTTGTTTGGGTGGTTGTTTGGGAAAAACAGTTTA
TAAACTGATTTTGGTAGTTTGGGTATTTAAAGCAAAAAAAAAAAACCAAACCTTTGGGTA
ACTGCACTGCATCCTTTGAACAGAGCAGTGCCAACTTATGAAGACGCTGCAGCTTGAAAG
GGGCTTTGCTGGGGGCGTCCCCTTAGCTGAGTACAAGCCCTCTTTGTTGCCTGCTTTGTG
CTTTCTGCACCAGACAGCCTGATGGAACATTTGCACCTGAGTTGTACATTTTTGAGGTGT
GCAGGGCAGCCTGGACACACCGTTTAGATTCTATGTGTATAGTACCCCATGCTCTCTCAC
ATGCCCTCTCTGGAAAGCATATGTACAGAATACACGTCATGTCCACTTGAAACCTGGTCA
CCTGGTGGAAACCCCTGGGGATTCTTCCTTAGGCATGACGGACGATTTCCATTCATCAGT
TTGTTTTGTTTTCCTTTTTCTTTAACTCTTGGACTTTTAAACCCTGCATATGATTCAATA
GGGTTTGAGATATATGTGCGACACTGACAGGTAAAACAGTACTAGCATCTTGGTTTCCTG
CCACCTTTTCAAAAAGATTTTTCTGATCGCTGTATTATACTGGGAAGGTTTTAAACAACC
CAGCTAAGGCTTCATTGAAGGTTGAGCGCAAAGTAGAGGAAAAAGCATTAGAAAGTGTTA
GCACCTTGCTGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               483-585, - strand, RNAz p=0.643397

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               483-585, - strand, RNAz p=0.643397

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-852, gnl|bosTau2|chr1 (54528282-54527455)
               

               
               1-852, gnl|Hg17|chr3 (187248514-187247652)
               

               
               1-852, gnl|Mm7|chr16 (22032895-22032020)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-852, gnl|bosTau2|chr1 (54528282-54527455)
               

               
               1-852, gnl|Hg17|chr3 (187248514-187247652)
               

               
               1-852, gnl|Mm7|chr16 (22032895-22032020)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               spl (0.143184)
               

               
               ese (0.126502)
               

               
               ecc (0.115035)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)
               

               
               ese (0.126502)
               

               
               ecc (0.115035)

	1-852, gnl\|bosTau2\|chr1 (54528282-54527455)
	1-852, gnl\|Hg17\|chr3 (187248514-187247652)
	1-852, gnl\|Mm7\|chr16 (22032895-22032020)