Non-Coding RNA Search

Ss1.1-rese33c_p7.5

Sequence:


               
               AGGTTCCCTGGAGGCTTCAGAGGCAGAGGACTCATGGAAGGAGGTCTCTCTGCCTCCAGT
CCTAGGAAGCTGCTGCGTCTGGAATCCCAGCCCCTGTCGCGCCTCCTGGACGAGCTGGAG
GAGCTGGTCGTGCTGCTGGATCCCAAGCCTGGGCCTGGTGGGACGATGTCCTATGGCACC
ACCCGACACCTGGCTGCAAGATACGGACTGCCTGCTGCCTGGTCCACCTTTGCCTACTCA
CTGCGGCCCAGTTGCTCACCTCTTCGGGGCCCTGATCGAGATGGTGGCAAAGGAGCCCTC
TGCCTCTCTGGGCCAGCTTGGCACACACCTGGCCCACATAGGACAGGCAGACGCACTGAA
GGTGCTGTCCAAACTTGGTTGATCTGGGGCTTGCCTGGCCTAGTACTCAACAAAAATAAA
GTTTCCCTTGAAGTAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGTTCCCTGGAGGCTTCAGAGGCAGAGGACTCATGGAAGGAGGTCTCTCTGCCTCCAGT
CCTAGGAAGCTGCTGCGTCTGGAATCCCAGCCCCTGTCGCGCCTCCTGGACGAGCTGGAG
GAGCTGGTCGTGCTGCTGGATCCCAAGCCTGGGCCTGGTGGGACGATGTCCTATGGCACC
ACCCGACACCTGGCTGCAAGATACGGACTGCCTGCTGCCTGGTCCACCTTTGCCTACTCA
CTGCGGCCCAGTTGCTCACCTCTTCGGGGCCCTGATCGAGATGGTGGCAAAGGAGCCCTC
TGCCTCTCTGGGCCAGCTTGGCACACACCTGGCCCACATAGGACAGGCAGACGCACTGAA
GGTGCTGTCCAAACTTGGTTGATCTGGGGCTTGCCTGGCCTAGTACTCAACAAAAATAAA
GTTTCCCTTGAAGTAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|21410760|gb|AAH31329.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|21410760|gb|AAH31329.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               295-436, + strand, RNAz p=0.997629

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               295-436, + strand, RNAz p=0.997629

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               68-436, gnl|bosTau2|chr18 (36887748-36887375)
               

               
               68-436, gnl|Hg17|chr19 (40922367-40922008)
               

               
               68-436, gnl|Mm7|chr7 (27508804-27509182)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               68-436, gnl|bosTau2|chr18 (36887748-36887375)
               

               
               68-436, gnl|Hg17|chr19 (40922367-40922008)
               

               
               68-436, gnl|Mm7|chr7 (27508804-27509182)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               lnt (0.142308)
               

               
               ese (0.126502)
               

               
               jej (0.0989218)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.142308)
               

               
               ese (0.126502)
               

               
               jej (0.0989218)

	68-436, gnl\|bosTau2\|chr18 (36887748-36887375)
	68-436, gnl\|Hg17\|chr19 (40922367-40922008)
	68-436, gnl\|Mm7\|chr7 (27508804-27509182)