Non-Coding RNA Search

Ss1.1-rese34c_e4.5

Sequence:


               
               GCCCCGGGGCATCATCCCGCTGGAGAACCTGAGCATCAGGGAGGTGGACGACCCCCGGAA
ACCCAACTGCTTCGAGCTTTACAACCCGAGCCACAAAGGGCAGGTGATCAAAGCCTGCAA
GACGGAGGCCGACGGCCGGGTGGTGGAGGGCAACCACGTGGTGTACCGCATCTCGGTGCC
CAGCCCCGAGGAGAAGGACGAGTGGATGAAGTCCATCAGAGCCAGTATCAGTAGGGATCC
TTTCTATGACATGCTGGCCACGAGGAAAAGGAGGATTGCCAATAAGAAGTAGCGCTGGCC
TGGCCCCAGCAGGTAATCGGAGAGCCAGACCCCACCGCACAGCGGGCCGGGCGCCTCCCG
CCACACCCCGGACCCGCGCCCGCCGCCCTGCCGCCCCGCGGACGGCGGCCCCCGCTGCTC
TCGAGGGTCCTGGCGCCTCGTGTCGTCCCTTCTGCCGACCGCCCAGCGCTCCCCCGCAGC
GGAAGGTGCCCGAGCGCGTCCTTCTCCAAGTTTCGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCCGGGGCATCATCCCGCTGGAGAACCTGAGCATCAGGGAGGTGGACGACCCCCGGAA
ACCCAACTGCTTCGAGCTTTACAACCCGAGCCACAAAGGGCAGGTGATCAAAGCCTGCAA
GACGGAGGCCGACGGCCGGGTGGTGGAGGGCAACCACGTGGTGTACCGCATCTCGGTGCC
CAGCCCCGAGGAGAAGGACGAGTGGATGAAGTCCATCAGAGCCAGTATCAGTAGGGATCC
TTTCTATGACATGCTGGCCACGAGGAAAAGGAGGATTGCCAATAAGAAGTAGCGCTGGCC
TGGCCCCAGCAGGTAATCGGAGAGCCAGACCCCACCGCACAGCGGGCCGGGCGCCTCCCG
CCACACCCCGGACCCGCGCCCGCCGCCCTGCCGCCCCGCGGACGGCGGCCCCCGCTGCTC
TCGAGGGTCCTGGCGCCTCGTGTCGTCCCTTCTGCCGACCGCCCAGCGCTCCCCCGCAGC
GGAAGGTGCCCGAGCGCGTCCTTCTCCAAGTTTCGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61838439|ref|XP_603080.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61838439|ref|XP_603080.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               110-229, - strand, RNAz p=0.622875

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               110-229, - strand, RNAz p=0.622875

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-277, gnl|bosTau2|chr5 (33067246-33066978)
               

               
               3-277, gnl|Hg17|chr19 (53673354-53674238)
               

               
               3-277, gnl|Mm7|chr7 (41984471-41984036)
               


               
               65-217, gnl|bosTau2|chr18 (50342989-50342837)
               

               
               65-217, gnl|Hg17|chr19 (53673507-53673659)
               

               
               65-217, gnl|Mm7|chr7 (41984321-41984169)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-277, gnl|bosTau2|chr5 (33067246-33066978)
               

               
               3-277, gnl|Hg17|chr19 (53673354-53674238)
               

               
               3-277, gnl|Mm7|chr7 (41984471-41984036)
               


               
               65-217, gnl|bosTau2|chr18 (50342989-50342837)
               

               
               65-217, gnl|Hg17|chr19 (53673507-53673659)
               

               
               65-217, gnl|Mm7|chr7 (41984321-41984169)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ese (0.126502)
               

               
               clu (0.119646)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.126502)
               

               
               clu (0.119646)

	3-277, gnl\|bosTau2\|chr5 (33067246-33066978)
	3-277, gnl\|Hg17\|chr19 (53673354-53674238)
	3-277, gnl\|Mm7\|chr7 (41984471-41984036)

	65-217, gnl\|bosTau2\|chr18 (50342989-50342837)
	65-217, gnl\|Hg17\|chr19 (53673507-53673659)
	65-217, gnl\|Mm7\|chr7 (41984321-41984169)