Non-Coding RNA Search

Ss1.1-rese34c_l6.5

Sequence:


               
               AACAGAGACTGAGACTTCCGCGCGAGCGTCTGGCTCAGTGACAGCAAAGACGTCGAAACG
GCGATCCAGAAATTCGGTGGAAGATGCTGATTCAGCTGGTCTGTGGCGAGACAGCGCTGA
GCCCGAGCCCGCAGTGAAGCAGAAAGGTGACTCCCCTAGCGATGCAGAAGGAGAGGTCGG
ACCCTCTGGCCAGGACAAGTGCGAGGCGTTGGAGGACTCCCAGCCACCCAGCGAGCTCCC
AGCCGCCGTCAGGAGGACACCCCGGCCTGGGAGCGCGAGGCCAGCGCCGCCCCGGGTGAG
ACGGCAGGAGAGCACCGAGGCGCTCCTGACGGACAGGACGGGGAGCGGGAAGGCCGTCGC
ACACGTGATTGTAGATTCGCAGAATTCTGACACCGAGGGCGACGACGAGTTTGTGGTGGA
GGCAGCACCCCAGCTCCCGGAGACGGCCGAGCTCGAGCTGGTTCAAGCAGTGGAGATAGA
AGGAGACGAGAAGCACGGAGGACTTGTCAAAAAAATTTTGGAGACTAAGAAGGATTATGA
GAAGTCGCAGCTGTCACCCAAACCCGGAGAAAAGGAAAGGGTGCTCGTCTTTGAGTCGGC
CTGGAAGAAGGAGAAGGACCTCGCGTCCAAGGAGATAGAGAAGCTGCGCGTGTCCATCCA
GACCCTGTGCCGCAGTGCGCTGCCCCTGGGCAACATCATGGACTACATCCAGGAGGACGT
GGATGCCATGCAGAGCGAGCTGCAGCTGTGGCACAGCGAGAACCGGCAGCACGCCGAGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACAGAGACTGAGACTTCCGCGCGAGCGTCTGGCTCAGTGACAGCAAAGACGTCGAAACG
GCGATCCAGAAATTCGGTGGAAGATGCTGATTCAGCTGGTCTGTGGCGAGACAGCGCTGA
GCCCGAGCCCGCAGTGAAGCAGAAAGGTGACTCCCCTAGCGATGCAGAAGGAGAGGTCGG
ACCCTCTGGCCAGGACAAGTGCGAGGCGTTGGAGGACTCCCAGCCACCCAGCGAGCTCCC
AGCCGCCGTCAGGAGGACACCCCGGCCTGGGAGCGCGAGGCCAGCGCCGCCCCGGGTGAG
ACGGCAGGAGAGCACCGAGGCGCTCCTGACGGACAGGACGGGGAGCGGGAAGGCCGTCGC
ACACGTGATTGTAGATTCGCAGAATTCTGACACCGAGGGCGACGACGAGTTTGTGGTGGA
GGCAGCACCCCAGCTCCCGGAGACGGCCGAGCTCGAGCTGGTTCAAGCAGTGGAGATAGA
AGGAGACGAGAAGCACGGAGGACTTGTCAAAAAAATTTTGGAGACTAAGAAGGATTATGA
GAAGTCGCAGCTGTCACCCAAACCCGGAGAAAAGGAAAGGGTGCTCGTCTTTGAGTCGGC
CTGGAAGAAGGAGAAGGACCTCGCGTCCAAGGAGATAGAGAAGCTGCGCGTGTCCATCCA
GACCCTGTGCCGCAGTGCGCTGCCCCTGGGCAACATCATGGACTACATCCAGGAGGACGT
GGATGCCATGCAGAGCGAGCTGCAGCTGTGGCACAGCGAGAACCGGCAGCACGCCGAGGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61831808|ref|XP_581195.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61831808|ref|XP_581195.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               335-442, + strand, RNAz p=0.779641
               

               
               649-768, - strand, RNAz p=0.540824

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               335-442, + strand, RNAz p=0.779641
               

               
               649-768, - strand, RNAz p=0.540824

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               335-462, gnl|bosTau2|chr3 (82561609-82561482)
               

               
               335-462, gnl|canFam2|chr25 (51826394-51826472)
               

               
               335-462, gnl|danRer3|chr9 (42106918-42106831)
               

               
               335-462, gnl|echTel1|scaffold_275311 (1160-1082)
               

               
               335-462, gnl|hg17|chr2 (239043467-239043545)
               

               
               335-462, gnl|Hg17|chr2 (239043466-239043593)
               

               
               335-462, gnl|loxAfr1|scaffold_102942 (2060-2138)
               

               
               335-462, gnl|mm7|chr1 (91428368-91428446)
               

               
               335-462, gnl|Mm7|chr1 (91428367-91428494)
               

               
               335-462, gnl|monDom2|scaffold_120 (654755-654677)
               

               
               335-462, gnl|oryCun1|scaffold_117638 (913-835)
               

               
               335-462, gnl|panTro1|chr13 (129990973-129991052)
               

               
               335-462, gnl|rheMac2|chr12 (102224894-102224972)
               

               
               335-462, gnl|rn3|chr9 (90941958-90942036)
               


               
               573-780, gnl|bosTau2|chr3 (82530526-82530319)
               

               
               573-780, gnl|Hg17|chr2 (239088095-239088302)
               

               
               573-780, gnl|Mm7|chr1 (91433360-91433569)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               335-462, gnl|bosTau2|chr3 (82561609-82561482)
               

               
               335-462, gnl|canFam2|chr25 (51826394-51826472)
               

               
               335-462, gnl|danRer3|chr9 (42106918-42106831)
               

               
               335-462, gnl|echTel1|scaffold_275311 (1160-1082)
               

               
               335-462, gnl|hg17|chr2 (239043467-239043545)
               

               
               335-462, gnl|Hg17|chr2 (239043466-239043593)
               

               
               335-462, gnl|loxAfr1|scaffold_102942 (2060-2138)
               

               
               335-462, gnl|mm7|chr1 (91428368-91428446)
               

               
               335-462, gnl|Mm7|chr1 (91428367-91428494)
               

               
               335-462, gnl|monDom2|scaffold_120 (654755-654677)
               

               
               335-462, gnl|oryCun1|scaffold_117638 (913-835)
               

               
               335-462, gnl|panTro1|chr13 (129990973-129991052)
               

               
               335-462, gnl|rheMac2|chr12 (102224894-102224972)
               

               
               335-462, gnl|rn3|chr9 (90941958-90942036)
               


               
               573-780, gnl|bosTau2|chr3 (82530526-82530319)
               

               
               573-780, gnl|Hg17|chr2 (239088095-239088302)
               

               
               573-780, gnl|Mm7|chr1 (91433360-91433569)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               tes (0.207814)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               clu (0.119646)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               clu (0.119646)

	335-442, + strand, RNAz p=0.779641
	649-768, - strand, RNAz p=0.540824

	335-462, gnl\|bosTau2\|chr3 (82561609-82561482)
	335-462, gnl\|canFam2\|chr25 (51826394-51826472)
	335-462, gnl\|danRer3\|chr9 (42106918-42106831)
	335-462, gnl\|echTel1\|scaffold_275311 (1160-1082)
	335-462, gnl\|hg17\|chr2 (239043467-239043545)
	335-462, gnl\|Hg17\|chr2 (239043466-239043593)
	335-462, gnl\|loxAfr1\|scaffold_102942 (2060-2138)
	335-462, gnl\|mm7\|chr1 (91428368-91428446)
	335-462, gnl\|Mm7\|chr1 (91428367-91428494)
	335-462, gnl\|monDom2\|scaffold_120 (654755-654677)
	335-462, gnl\|oryCun1\|scaffold_117638 (913-835)
	335-462, gnl\|panTro1\|chr13 (129990973-129991052)
	335-462, gnl\|rheMac2\|chr12 (102224894-102224972)
	335-462, gnl\|rn3\|chr9 (90941958-90942036)

	573-780, gnl\|bosTau2\|chr3 (82530526-82530319)
	573-780, gnl\|Hg17\|chr2 (239088095-239088302)
	573-780, gnl\|Mm7\|chr1 (91433360-91433569)