Non-Coding RNA Search

Ss1.1-rese34c_p12.5

Sequence:


               
               GATGCGGGCTGCCTGCGCCGTGTAGACCTGCGCTTCAACAACTTGGGCCTGCGCGGCCTT
TCCGTCATCATCCCACACGTGGCCCGCTTCCAGCACCTGGCTAGCTTGCGGCTGCACTAT
GTGCACGGGGACTCGAGGCAGCCGTCTGTGGACGGCGAGGACAACTTCCGCTACTTTCTG
GCCCAGATGGGTCGCTTCACCTGTCTCCGGGAACTCAGCATGGGCTCCTCTCTCCTCTCG
GGGCGGCTGGACCAGTTGCTCAGCACTTTGCAGAGCCCTCTGGAGAGCCTGGAGCTGGCC
TTCTGTGCCCTGCTGCCTGAAGACCTGCGTTTCCTGGCACGAAGCCCACATGCTGTCCAC
CTCAAGAAGTTGGACCTGAGTGGCAACGATTTATCCGGCAGCCAGCTGGAACCCTTTCAG
GGTCTGCTACAGGCAGCAGCAGCCACGCTACTGCACCTTGAACTAACCGAGTGCCAGCTT
GCTGATACCCAGCTGCTGGCCACACTCCCTGTGCTGACTCGTTGCACCAACCTCCGCTAC
CTCGGCCTTTATGGCAACCCGCTGTCCATGGCAGGCCTCAAGGAGCTCCTGCGGGACTCG
GTGGCGCAGGCTGAGCTGCGCACAGTGGTGCACCCTTTCCCTGTGGACTGCTACGAAGGC
CTGCCCTGGCCGCCACCTGCTTCTGTCCTGCTGGAAGCCTCCATCAACGAGGAGAAGTTT
GCCCGCGTGGAGGCCGAGTTGCATCAGCTGCTGCTGGCCTCAGGCCGTGCCCATGTGCTG
TGGACTACAGACATCTATGGGCGCCTGGCTGCAGACTACTTTAGCCTGTGACCTCCAGGC
TCTGGGTGAGAGGCTGTCCTGGGGTCCAGGGCTGCTGGAGGCCCGTTGCCCCTTGGGTAG
GCAAAGCCTTCACTGGGCCTCTGCTGGAAGCCTGACAAAAAGGCACAGTCTGATTTCTTT
GCTCCCGGGAGCACCTCAAGCCTCCCATGCTTTCTGCAGCACCCTGCACAGTTTGTCCTG
CTCCTGCTCCCCCAACGGGCTGAATATCTGTGGGCCCGGGGCTGGATTCCAGGCCTGCAA
GGCCCTGCTTGGTTTGGCTGCTCTTGGCTGCCCTTTGGTGTCCTGGTTCTCTCCTTGGAA
TGATCCTGGGGTCTGTGACCTGAGAAAGGATGTTTTCCTCTGGGCCATCCCAAGAGCAGA
CTGCTCTGGGGGGCTGAAGTGGGGCAGGGGCTTGCTTCAACGAGGGCTGGGCCCCCACGC
TCTCTGGGGCCGCTTATTGTTCTCACTGCCCTGATACCCAGGAGGCCGCCTGTTGGCTGG
GTTTTGGGGCCAGGGGGTGTCATTAAGGTACAAACG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGCGGGCTGCCTGCGCCGTGTAGACCTGCGCTTCAACAACTTGGGCCTGCGCGGCCTT
TCCGTCATCATCCCACACGTGGCCCGCTTCCAGCACCTGGCTAGCTTGCGGCTGCACTAT
GTGCACGGGGACTCGAGGCAGCCGTCTGTGGACGGCGAGGACAACTTCCGCTACTTTCTG
GCCCAGATGGGTCGCTTCACCTGTCTCCGGGAACTCAGCATGGGCTCCTCTCTCCTCTCG
GGGCGGCTGGACCAGTTGCTCAGCACTTTGCAGAGCCCTCTGGAGAGCCTGGAGCTGGCC
TTCTGTGCCCTGCTGCCTGAAGACCTGCGTTTCCTGGCACGAAGCCCACATGCTGTCCAC
CTCAAGAAGTTGGACCTGAGTGGCAACGATTTATCCGGCAGCCAGCTGGAACCCTTTCAG
GGTCTGCTACAGGCAGCAGCAGCCACGCTACTGCACCTTGAACTAACCGAGTGCCAGCTT
GCTGATACCCAGCTGCTGGCCACACTCCCTGTGCTGACTCGTTGCACCAACCTCCGCTAC
CTCGGCCTTTATGGCAACCCGCTGTCCATGGCAGGCCTCAAGGAGCTCCTGCGGGACTCG
GTGGCGCAGGCTGAGCTGCGCACAGTGGTGCACCCTTTCCCTGTGGACTGCTACGAAGGC
CTGCCCTGGCCGCCACCTGCTTCTGTCCTGCTGGAAGCCTCCATCAACGAGGAGAAGTTT
GCCCGCGTGGAGGCCGAGTTGCATCAGCTGCTGCTGGCCTCAGGCCGTGCCCATGTGCTG
TGGACTACAGACATCTATGGGCGCCTGGCTGCAGACTACTTTAGCCTGTGACCTCCAGGC
TCTGGGTGAGAGGCTGTCCTGGGGTCCAGGGCTGCTGGAGGCCCGTTGCCCCTTGGGTAG
GCAAAGCCTTCACTGGGCCTCTGCTGGAAGCCTGACAAAAAGGCACAGTCTGATTTCTTT
GCTCCCGGGAGCACCTCAAGCCTCCCATGCTTTCTGCAGCACCCTGCACAGTTTGTCCTG
CTCCTGCTCCCCCAACGGGCTGAATATCTGTGGGCCCGGGGCTGGATTCCAGGCCTGCAA
GGCCCTGCTTGGTTTGGCTGCTCTTGGCTGCCCTTTGGTGTCCTGGTTCTCTCCTTGGAA
TGATCCTGGGGTCTGTGACCTGAGAAAGGATGTTTTCCTCTGGGCCATCCCAAGAGCAGA
CTGCTCTGGGGGGCTGAAGTGGGGCAGGGGCTTGCTTCAACGAGGGCTGGGCCCCCACGC
TCTCTGGGGCCGCTTATTGTTCTCACTGCCCTGATACCCAGGAGGCCGCCTGTTGGCTGG
GTTTTGGGGCCAGGGGGTGTCATTAAGGTACAAACG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61841903|ref|XP_590479.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61841903|ref|XP_590479.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               380-539, - strand, RNAz p=0.974428
               

               
               820-938, + strand, RNAz p=0.800401

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               380-539, - strand, RNAz p=0.974428
               

               
               820-938, + strand, RNAz p=0.800401

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_014665, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_014665, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               261-1126, gnl|bosTau2|chr14 (3244701-3243832)
               

               
               261-1126, gnl|Hg17|chr8 (145717100-145717962)
               

               
               261-1126, gnl|Mm7|chr15 (76796629-76797400)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               261-1126, gnl|bosTau2|chr14 (3244701-3243832)
               

               
               261-1126, gnl|Hg17|chr8 (145717100-145717962)
               

               
               261-1126, gnl|Mm7|chr15 (76796629-76797400)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               hyp (0.142837)
               

               
               ese (0.126502)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)
               

               
               ese (0.126502)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

	380-539, - strand, RNAz p=0.974428
	820-938, + strand, RNAz p=0.800401

	261-1126, gnl\|bosTau2\|chr14 (3244701-3243832)
	261-1126, gnl\|Hg17\|chr8 (145717100-145717962)
	261-1126, gnl\|Mm7\|chr15 (76796629-76797400)

	hyp (0.142837)
	ese (0.126502)
	ecc (0.115035)
	jca (0.11396)
	cty (0.10408)