Ss1.1-rese35c_e8.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGCTCGCTGTGCAATGGCGACTCCCAGCCTGCGGGGTCGACTAGCACGGCTTGGAAACC CACGGAGGCCTATACTGAAGCCCAACAAGCCCCTCATCCTAGCCAATCATGTCGGGGAAC GGCGCCGGGAGAAGGGCGAGGCGACCTGTATCACGGAGATGTCAGTAATGATGGCTTGCT GGAAGCAGAATGAATTCCGCGACGAAGCGTGCAGAAAAGAGATTCAGGACTTCTTCGATT GTGCTTCGAGGGCTGAGGCTGCCCGAAAGATGAGATCAATCCAGGAGAACCTGGGAGAGT TGGGGAGTTTACCCCCCAAGAAATTGAATAAGTTGTTACATAGGTTTCCTAACAAACCTC ATGTCAGCTGAAAATGGAGAAGCATTTTCAATGACTGGACTGTAGCTTCTGAGAACTATG CAGAGGCTTTTTAGAGATATTTGCATTGTCACACGTTCTTTTTGAAGAGTGGAAGGACGC GAAACACTTTTTTTTAACCCTTTGGAATCATTATGTGGATGGAAATTATATTTTATGTTG AAATAAAATCCCCTGAAGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGCTCGCTGTGCAATGGCGACTCCCAGCCTGCGGGGTCGACTAGCACGGCTTGGAAACC CACGGAGGCCTATACTGAAGCCCAACAAGCCCCTCATCCTAGCCAATCATGTCGGGGAAC GGCGCCGGGAGAAGGGCGAGGCGACCTGTATCACGGAGATGTCAGTAATGATGGCTTGCT GGAAGCAGAATGAATTCCGCGACGAAGCGTGCAGAAAAGAGATTCAGGACTTCTTCGATT GTGCTTCGAGGGCTGAGGCTGCCCGAAAGATGAGATCAATCCAGGAGAACCTGGGAGAGT TGGGGAGTTTACCCCCCAAGAAATTGAATAAGTTGTTACATAGGTTTCCTAACAAACCTC ATGTCAGCTGAAAATGGAGAAGCATTTTCAATGACTGGACTGTAGCTTCTGAGAACTATG CAGAGGCTTTTTAGAGATATTTGCATTGTCACACGTTCTTTTTGAAGAGTGGAAGGACGC GAAACACTTTTTTTTAACCCTTTGGAATCATTATGTGGATGGAAATTATATTTTATGTTG AAATAAAATCCCCTGAAGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 5 entry(ies) | More info |
| Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
| 256-445, + strand, RNAz p=0.975699 | |
| 256-445, - strand, RNAz p=0.975699 | |
| 256-405, + strand, RNAz p=0.777017 | |
| 256-405, - strand, RNAz p=0.777017 | |
| 437-535, + strand, RNAz p=0.740272 |
| Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 256-445, + strand, RNAz p=0.975699 | |
| 256-445, - strand, RNAz p=0.975699 | |
| 256-405, + strand, RNAz p=0.777017 | |
| 256-405, - strand, RNAz p=0.777017 | |
| 437-535, + strand, RNAz p=0.740272 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_203298, + |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 1-147, gnl|bosTau2|chr28 (22923362-22923508) | |
| 1-147, gnl|canFam2|chr4 (27428050-27428200) | |
| 1-147, gnl|dasNov1|scaffold_25955 (9283-9417) | |
| 1-147, gnl|echTel1|scaffold_308963 (74257-74408) | |
| 1-147, gnl|Hg17|chr10 (75211826-75211972) | |
| 1-147, gnl|hg17|chr17 (19900162-19900315) | |
| 1-147, gnl|loxAfr1|scaffold_45409 (4067-4217) | |
| 1-147, gnl|mm7|chr14 (18359608-18359827) | |
| 1-147, gnl|Mm7|chr14 (18359617-18359763) | |
| 1-147, gnl|monDom2|scaffold_0 (69816164-69816310) | |
| 1-147, gnl|oryCun1|scaffold_167700 (7209-7062) | |
| 1-147, gnl|panTro1|chr19 (20237445-20237598) | |
| 1-147, gnl|rheMac2|chr16 (19614778-19614926) | |
| 1-147, gnl|rn3|chr15 (3819353-3819134) | |
| 256-562, gnl|bosTau2|chr28 (22924335-22924651) | |
| 256-562, gnl|canFam2|chr4 (27429046-27429261) | |
| 256-562, gnl|dasNov1|scaffold_25955 (9528-9741) | |
| 256-562, gnl|echTel1|scaffold_308963 (74525-74712) | |
| 256-562, gnl|Hg17|chr10 (75212836-75213137) | |
| 256-562, gnl|hg17|chr17 (19900422-19900636) | |
| 256-562, gnl|loxAfr1|scaffold_45409 (5011-5221) | |
| 256-562, gnl|mm7|chr14 (18360675-18360896) | |
| 256-562, gnl|Mm7|chr14 (18360676-18360982) | |
| 256-562, gnl|monDom2|scaffold_0 (69816427-69816619) | |
| 256-562, gnl|oryCun1|scaffold_167700 (6944-6739) | |
| 256-562, gnl|panTro1|chr19 (20237705-20237919) | |
| 256-562, gnl|rheMac2|chr16 (19615033-19615247) | |
| 256-562, gnl|rn3|chr15 (3818468-3818258) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-147, gnl|bosTau2|chr28 (22923362-22923508) | |
| 1-147, gnl|canFam2|chr4 (27428050-27428200) | |
| 1-147, gnl|dasNov1|scaffold_25955 (9283-9417) | |
| 1-147, gnl|echTel1|scaffold_308963 (74257-74408) | |
| 1-147, gnl|Hg17|chr10 (75211826-75211972) | |
| 1-147, gnl|hg17|chr17 (19900162-19900315) | |
| 1-147, gnl|loxAfr1|scaffold_45409 (4067-4217) | |
| 1-147, gnl|mm7|chr14 (18359608-18359827) | |
| 1-147, gnl|Mm7|chr14 (18359617-18359763) | |
| 1-147, gnl|monDom2|scaffold_0 (69816164-69816310) | |
| 1-147, gnl|oryCun1|scaffold_167700 (7209-7062) | |
| 1-147, gnl|panTro1|chr19 (20237445-20237598) | |
| 1-147, gnl|rheMac2|chr16 (19614778-19614926) | |
| 1-147, gnl|rn3|chr15 (3819353-3819134) | |
| 256-562, gnl|bosTau2|chr28 (22924335-22924651) | |
| 256-562, gnl|canFam2|chr4 (27429046-27429261) | |
| 256-562, gnl|dasNov1|scaffold_25955 (9528-9741) | |
| 256-562, gnl|echTel1|scaffold_308963 (74525-74712) | |
| 256-562, gnl|Hg17|chr10 (75212836-75213137) | |
| 256-562, gnl|hg17|chr17 (19900422-19900636) | |
| 256-562, gnl|loxAfr1|scaffold_45409 (5011-5221) | |
| 256-562, gnl|mm7|chr14 (18360675-18360896) | |
| 256-562, gnl|Mm7|chr14 (18360676-18360982) | |
| 256-562, gnl|monDom2|scaffold_0 (69816427-69816619) | |
| 256-562, gnl|oryCun1|scaffold_167700 (6944-6739) | |
| 256-562, gnl|panTro1|chr19 (20237705-20237919) | |
| 256-562, gnl|rheMac2|chr16 (19615033-19615247) | |
| 256-562, gnl|rn3|chr15 (3818468-3818258) |
| Expressed library(ies): 24 entry(ies) | More info |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
| che (0.817884) | |
| sme (0.610874) | |
| pro (0.512033) | |
| cst (0.420109) | |
| pgl (0.35545) | |
| isp (0.300752) | |
| ssp (0.271039) | |
| eep (0.245128) | |
| eru (0.240096) | |
| cmu (0.186393) | |
| mgm (0.180343) | |
| rec (0.17307) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| cki (0.165235) | |
| cje (0.165235) | |
| nco (0.161734) | |
| eli (0.151814) | |
| bfe (0.149858) | |
| hyp (0.142837) | |
| csk (0.140746) | |
| ute (0.132784) | |
| ese (0.126502) | |
| spc (0.113366) |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| che (0.817884) | |
| sme (0.610874) | |
| pro (0.512033) | |
| cst (0.420109) | |
| pgl (0.35545) | |
| isp (0.300752) | |
| ssp (0.271039) | |
| eep (0.245128) | |
| eru (0.240096) | |
| cmu (0.186393) | |
| mgm (0.180343) | |
| rec (0.17307) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| cki (0.165235) | |
| cje (0.165235) | |
| nco (0.161734) | |
| eli (0.151814) | |
| bfe (0.149858) | |
| hyp (0.142837) | |
| csk (0.140746) | |
| ute (0.132784) | |
| ese (0.126502) | |
| spc (0.113366) |