Non-Coding RNA Search

Ss1.1-rese36c_a12.5

Sequence:


               
               AAACCCTCGGGTTGTTAAGTCCCATGTTTTACGAGTCAGAGCCATAAGCTGCTTTTCCCA
GTTATGCATTTCTATCACTTGCCTCAATGGTTTATGATAAGCCGGTGTTAGTTCTCCTTT
GCTCCAGTTTGGTTATCCACATTTTAGATGAGTGAAACAGACACAGCTGGAAAGACTGCT
GTTATAGTACAGCTTTGGTTTTTCAAACTCCTATTTCGATATCAATTAGTGATTCAATAA
CAAATAATGTCTGGTCTACCACAGCAGCCCGAGCACTTCACTAACAGGTTGTGGATTTTT
TTCTTCCTCTTTGTGTATCCAAAGGATGTGCCACTCCAGGTTTAACTTGGAAAACTGAAA
GTGTTCCCACAGAGCTTTAAAAAAACCCAAACCAAACCAAACCAAACTGAAATTGTGTTA
TTTGGACACTTTTACTATTATTGACTAGTACTTTTCTAATGGTGCTTCTGTTTGAGAATT
AAATTATGTCTGAGAATTAAATTGGGGGGCAGTAACCCAGTAGAGGTCTATGTCAAAACA
AGTATATATATAAAGTCATCTGTGAAATGAAGTTATTGTTCTTGTTGGAAAGAGACAAAA
TGCAGTTCACTTGCTTCTCCAGATCAGTTAACACTTATCACTTAAATGATCAGCAGCTTG
TTAAATCAGGATTTGACTTCATACACTGAATTTTCAGGATTTTATCTCAAGTAACTCTAG
ACACTAACCTTGATAGTAATACAGTAGAGCGTTCTTATTCCTTCATTGTATAATAATGCC
TTTAATATGAAATGCTACATTATTTATAATTGATATAGTTAATGTATCTTTTTATAGTTG
TAAGTAAACAGAGGTGGTGTATTTAACCTTCTGTAATATACTGTATTTAGAAATGGAAGT
CTATATAGTAGTAGATTTTACTTCTTTTAAGGTTTACTCCTGTGGTACGGTTTTAAAAGA
TCTATTGGCCTGGAAATTCTGACCCTAACTGCAGATTGTGTTCAACAATGCAACAACCAT
AAAATAAAGTTGGATATTTGAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACCCTCGGGTTGTTAAGTCCCATGTTTTACGAGTCAGAGCCATAAGCTGCTTTTCCCA
GTTATGCATTTCTATCACTTGCCTCAATGGTTTATGATAAGCCGGTGTTAGTTCTCCTTT
GCTCCAGTTTGGTTATCCACATTTTAGATGAGTGAAACAGACACAGCTGGAAAGACTGCT
GTTATAGTACAGCTTTGGTTTTTCAAACTCCTATTTCGATATCAATTAGTGATTCAATAA
CAAATAATGTCTGGTCTACCACAGCAGCCCGAGCACTTCACTAACAGGTTGTGGATTTTT
TTCTTCCTCTTTGTGTATCCAAAGGATGTGCCACTCCAGGTTTAACTTGGAAAACTGAAA
GTGTTCCCACAGAGCTTTAAAAAAACCCAAACCAAACCAAACCAAACTGAAATTGTGTTA
TTTGGACACTTTTACTATTATTGACTAGTACTTTTCTAATGGTGCTTCTGTTTGAGAATT
AAATTATGTCTGAGAATTAAATTGGGGGGCAGTAACCCAGTAGAGGTCTATGTCAAAACA
AGTATATATATAAAGTCATCTGTGAAATGAAGTTATTGTTCTTGTTGGAAAGAGACAAAA
TGCAGTTCACTTGCTTCTCCAGATCAGTTAACACTTATCACTTAAATGATCAGCAGCTTG
TTAAATCAGGATTTGACTTCATACACTGAATTTTCAGGATTTTATCTCAAGTAACTCTAG
ACACTAACCTTGATAGTAATACAGTAGAGCGTTCTTATTCCTTCATTGTATAATAATGCC
TTTAATATGAAATGCTACATTATTTATAATTGATATAGTTAATGTATCTTTTTATAGTTG
TAAGTAAACAGAGGTGGTGTATTTAACCTTCTGTAATATACTGTATTTAGAAATGGAAGT
CTATATAGTAGTAGATTTTACTTCTTTTAAGGTTTACTCCTGTGGTACGGTTTTAAAAGA
TCTATTGGCCTGGAAATTCTGACCCTAACTGCAGATTGTGTTCAACAATGCAACAACCAT
AAAATAAAGTTGGATATTTGAGAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               840-959, - strand, RNAz p=0.932508

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               840-959, - strand, RNAz p=0.932508

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               6-253, gnl|bosTau2|chr28 (9206674-9206432)
               

               
               6-253, gnl|Hg17|chr15 (99273318-99273562)
               

               
               6-253, gnl|Mm7|chr7 (62249861-62249626)
               


               
               256-1044, gnl|bosTau2|chr28 (9206407-9205627)
               

               
               256-1044, gnl|Hg17|chr15 (99273587-99274351)
               

               
               256-1044, gnl|Mm7|chr7 (62249611-62248861)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-253, gnl|bosTau2|chr28 (9206674-9206432)
               

               
               6-253, gnl|Hg17|chr15 (99273318-99273562)
               

               
               6-253, gnl|Mm7|chr7 (62249861-62249626)
               


               
               256-1044, gnl|bosTau2|chr28 (9206407-9205627)
               

               
               256-1044, gnl|Hg17|chr15 (99273587-99274351)
               

               
               256-1044, gnl|Mm7|chr7 (62249611-62248861)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               sin (0.69979)
               

               
               lin (0.582411)
               

               
               tra (0.492368)
               

               
               ret (0.257467)
               

               
               mgp (0.230681)
               

               
               eye (0.170503)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               ese (0.126502)
               

               
               jca (0.11396)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.69979)
               

               
               lin (0.582411)
               

               
               tra (0.492368)
               

               
               ret (0.257467)
               

               
               mgp (0.230681)
               

               
               eye (0.170503)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               ese (0.126502)
               

               
               jca (0.11396)

	6-253, gnl\|bosTau2\|chr28 (9206674-9206432)
	6-253, gnl\|Hg17\|chr15 (99273318-99273562)
	6-253, gnl\|Mm7\|chr7 (62249861-62249626)

	256-1044, gnl\|bosTau2\|chr28 (9206407-9205627)
	256-1044, gnl\|Hg17\|chr15 (99273587-99274351)
	256-1044, gnl\|Mm7\|chr7 (62249611-62248861)

	sin (0.69979)
	lin (0.582411)
	tra (0.492368)
	ret (0.257467)
	mgp (0.230681)
	eye (0.170503)
	bfe (0.149858)
	fat (0.147427)
	ese (0.126502)
	jca (0.11396)