Non-Coding RNA Search

Ss1.1-rese36c_b11.5

Sequence:


               
               ACTGAAGAGCAGGAATTATTCATAACTTCCCAGCATTATTATCACTTTATGTAGATAAGG
ATTTTGCGAATCCTATCTAGGCATACCCTTGTATCTAGAGTTCATAAGAAGTTCTCTTTA
AGTGGGAGAATGACCTTCCCATAAGACAACTCTCCATTTCCAGGGTGATTTCAGAGGTGT
CTCTTTTGGACTGCTGCTCCTGGATCAACTTTCATAGCTACGCTCTTCTCTGCATAAATG
TAAAGCCAGGCACAGAGTAAAAATCTGCTTCTTGCAAATGAAGAAAACACTTGGAACCAC
TAGCTTCCTGGCACAAGCAGCAGTAATTCTAAGCTAGTTGGAGCCTTTTTCGAACTCACC
TCCCTAAGTCTTTGCACTTCACCAGAGAATGTAAAATGTTCATCCTGGTGAATTACAGGC
AAGTTCTGCCCCCTAAGTATTTCCTGGGAGAGGGAGAAGGGGAAAGTGAGGAAGTTACAG
AAGGAAAAAGCACAGGTGAAAACCTCCAACTTCCTCCCACACCACTGCTTCACCCTTTCC
TTCTCACTGCTCTTTTGAAAGGTGTATAAATCCTGCTCTGGGTTAGAATTCTTATTAACA
AGGCTATATACATATAAATATATATAAATATATTCATTTTTTTCAGCCCTGCAGGCATAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTGAAGAGCAGGAATTATTCATAACTTCCCAGCATTATTATCACTTTATGTAGATAAGG
ATTTTGCGAATCCTATCTAGGCATACCCTTGTATCTAGAGTTCATAAGAAGTTCTCTTTA
AGTGGGAGAATGACCTTCCCATAAGACAACTCTCCATTTCCAGGGTGATTTCAGAGGTGT
CTCTTTTGGACTGCTGCTCCTGGATCAACTTTCATAGCTACGCTCTTCTCTGCATAAATG
TAAAGCCAGGCACAGAGTAAAAATCTGCTTCTTGCAAATGAAGAAAACACTTGGAACCAC
TAGCTTCCTGGCACAAGCAGCAGTAATTCTAAGCTAGTTGGAGCCTTTTTCGAACTCACC
TCCCTAAGTCTTTGCACTTCACCAGAGAATGTAAAATGTTCATCCTGGTGAATTACAGGC
AAGTTCTGCCCCCTAAGTATTTCCTGGGAGAGGGAGAAGGGGAAAGTGAGGAAGTTACAG
AAGGAAAAAGCACAGGTGAAAACCTCCAACTTCCTCCCACACCACTGCTTCACCCTTTCC
TTCTCACTGCTCTTTTGAAAGGTGTATAAATCCTGCTCTGGGTTAGAATTCTTATTAACA
AGGCTATATACATATAAATATATATAAATATATTCATTTTTTTCAGCCCTGCAGGCATAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               358-551, + strand, RNAz p=0.992454

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               358-551, + strand, RNAz p=0.992454

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               458-583, + strand, RNAmicro p=0.99975
               

               
               466-597, - strand, RNAmicro p=0.995164

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               458-583, + strand, RNAmicro p=0.99975
               

               
               466-597, - strand, RNAmicro p=0.995164

Similar Transcript(s): 5 entry(ies)

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Similar Transcript(s): 5 entry(ies)

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               361-442, DKFZp761B051_r1 761 (synonym (emb|AL119305.1|), blast E-value=9e-16, 
identity=89.02% 
               

               
               361-442, AGENCOURT_6622471 NIH_MGC_124 Homo sapiens cDNA clone IMAGE 
(gb|BM906928.1|), blast E-value=9e-16, identity=89.02% 
               

               
               361-442, AGENCOURT_16389558 NIH_MGC_229 Homo sapiens cDNA clone 
(gb|CK004865.1|), blast E-value=9e-16, identity=89.02% 
               

               
               367-551, 1459073 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DT896926.1|), 
blast E-value=9e-19, identity=82.8% 
               

               
               361-442, yt90a03.r1 Soares_pineal_gland_N3HPG Homo sapiens cDNA clone 
(gb|H92676.1|), blast E-value=0.00000000000005, identity=87.8%

Similar Transcript(s): 5 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               361-442, DKFZp761B051_r1 761 (synonym (emb|AL119305.1|), blast E-value=9e-16, 
identity=89.02% 
               

               
               361-442, AGENCOURT_6622471 NIH_MGC_124 Homo sapiens cDNA clone IMAGE 
(gb|BM906928.1|), blast E-value=9e-16, identity=89.02% 
               

               
               361-442, AGENCOURT_16389558 NIH_MGC_229 Homo sapiens cDNA clone 
(gb|CK004865.1|), blast E-value=9e-16, identity=89.02% 
               

               
               367-551, 1459073 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DT896926.1|), 
blast E-value=9e-19, identity=82.8% 
               

               
               361-442, yt90a03.r1 Soares_pineal_gland_N3HPG Homo sapiens cDNA clone 
(gb|H92676.1|), blast E-value=0.00000000000005, identity=87.8%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               96-660, gnl|bosTau2|chr1 (35609032-35608454)
               

               
               96-660, gnl|Hg17|chr3 (117004796-117004222)
               

               
               96-660, gnl|Mm7|chr16 (41941368-41941933)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               96-660, gnl|bosTau2|chr1 (35609032-35608454)
               

               
               96-660, gnl|Hg17|chr3 (117004796-117004222)
               

               
               96-660, gnl|Mm7|chr16 (41941368-41941933)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fcc (0.197785)
               

               
               fhi (0.169578)
               

               
               ese (0.126502)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               fhi (0.169578)
               

               
               ese (0.126502)

	458-583, + strand, RNAmicro p=0.99975
	466-597, - strand, RNAmicro p=0.995164

	361-442, DKFZp761B051_r1 761 (synonym (emb\|AL119305.1\|), blast E-value=9e-16, identity=89.02%
	361-442, AGENCOURT_6622471 NIH_MGC_124 Homo sapiens cDNA clone IMAGE (gb\|BM906928.1\|), blast E-value=9e-16, identity=89.02%
	361-442, AGENCOURT_16389558 NIH_MGC_229 Homo sapiens cDNA clone (gb\|CK004865.1\|), blast E-value=9e-16, identity=89.02%
	367-551, 1459073 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DT896926.1\|), blast E-value=9e-19, identity=82.8%
	361-442, yt90a03.r1 Soares_pineal_gland_N3HPG Homo sapiens cDNA clone (gb\|H92676.1\|), blast E-value=0.00000000000005, identity=87.8%

	96-660, gnl\|bosTau2\|chr1 (35609032-35608454)
	96-660, gnl\|Hg17\|chr3 (117004796-117004222)
	96-660, gnl\|Mm7\|chr16 (41941368-41941933)